PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID ONIVA04G08300.1
Organism
Oryza sativa f. spontanea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
Family M-type_MADS
Protein Properties Length: 73aa    MW: 8218.59 Da    PI: 9.7172
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
ONIVA04G08300.1genomeEnsemblPlantsView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF48.61.1e-151153244
                     ---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTS CS
           SRF-TF  2 rienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstg 44
                     rie+  +r + f kR++g+ KKAeEL vLCda v  +++s +g
  ONIVA04G08300.1 11 RIEDRVRRGICFRKRLAGLEKKAEELAVLCDAHVGFVVLSCSG 53
                     8**************************************9877 PP
Sequence ? help Back to Top
Protein Sequence    Length: 73 aa     Download sequence    
MGRRGRVVLR RIEDRVRRGI CFRKRLAGLE KKAEELAVLC DAHVGFVVLS CSGDDANPHH  60
FAAPATHLEL LFH
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G30260.11e-14MIKC_MADS family protein