PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

ONIVA04G09470.1

Organism

Oryza sativa f. spontanea

Taxonomic ID

4536

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa

Family

LBD

Protein Properties

Length: 89aa MW: 10422.5 Da PI: 4.44

Description

LBD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
ONIVA04G09470.1	genome	EnsemblPlants	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF260	46.8	8.4e-15	1	52	46	97
DUF260 46 lkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkaelall 97 +++lp +++ d++sslvyeA+ r+rdPvy +v+ i+ lq+q++ql+ +la ONIVA04G09470.1 1 MQELPVQQQGDTVSSLVYEANDRMRDPVYDCVRAISFLQNQVSQLQMQLAIG 52 68999*******************************************9875 PP

Sequence ? help Back to Top
Protein Sequence Length: 89 aa Download sequence
MQELPVQQQG DTVSSLVYEA NDRMRDPVYD CVRAISFLQN QVSQLQMQLA IGQGENLCIQ 60 MQHRDGNENE KNAREEEERE RREKREGNI

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G30130.1	9e-28	LBD family protein

Link Out ? help Back to Top
Ensembl	ONIVA04G09470.1