PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

ONIVA04G10490.1

Organism

Oryza sativa f. spontanea

Taxonomic ID

4536

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa

Family

FAR1

Protein Properties

Length: 516aa MW: 54228.6 Da PI: 10.5185

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
ONIVA04G10490.1	genome	EnsemblPlants	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	76.8	4.2e-24	221	309	1	90
FAR1 1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkek.dgkwevtkleleHnHela 90 +fY+ Y+ +vGF+vrk++ +ksk++geit+r+f Cs+eg+r++ k+ ++ + + +rtgC+a+l+++++k +k ev+ ++ HnH+l+ ONIVA04G10490.1 221 EFYRYYGWKVGFNVRKEYANKSKKTGEITSRKFACSREGYRANVKRG--NHMVPMPDSRTGCNAHLVIRRKKpGAKLEVYAFQPRHNHPLF 309 6****************************************9988..9999***************9**************97 PP

Sequence ? help Back to Top
Protein Sequence Length: 516 aa Download sequence
MSSPAEPPPP EHPPTPAPAP APASPPPHPA ASGNEAAAPP KPNPPITPAP GRNASAAPPS 60 GSPATAAAAA PVPSRKESGS TSAAAPAAAT RKASGVAAAT TGVLPRKPPG TTAPVAARNI 120 PATTAASRTA TRATTTTTAT SVSRRPAAAA AAVASRIPLR ATDATTTHAA SRNPLTGAAA 180 ATATATVAAV GRGGFRAAPT RPEEYTPRMG MEFESEHEAY EFYRYYGWKV GFNVRKEYAN 240 KSKKTGEITS RKFACSREGY RANVKRGNHM VPMPDSRTGC NAHLVIRRKK PGAKLEVYAF 300 QPRHNHPLFA TSCMPNPLQP NVVHWTTLLD AVTPPDLLMD GENIMDKSSG TTAKESKKKG 360 QKNKIQSRNC IEKGLRKKQK VHSEQPSEYA LLGGSQSGNM FQAFEGPPNM SPLGTQTPTY 420 KTYRGIDLSS PMGPISYDEM PSGLDPTFTT VLQPITLLRC QVAAHTTSKA NVKDYPISIR 480 SSIQQLLYII QLIMPNGAAI FPIGICSTGT VAQANL

Sequence ? help Back to Top

Protein Sequence Length: 516 aa Download sequence

MSSPAEPPPP EHPPTPAPAP APASPPPHPA ASGNEAAAPP KPNPPITPAP GRNASAAPPS  60
GSPATAAAAA PVPSRKESGS TSAAAPAAAT RKASGVAAAT TGVLPRKPPG TTAPVAARNI  120
PATTAASRTA TRATTTTTAT SVSRRPAAAA AAVASRIPLR ATDATTTHAA SRNPLTGAAA  180
ATATATVAAV GRGGFRAAPT RPEEYTPRMG MEFESEHEAY EFYRYYGWKV GFNVRKEYAN  240
KSKKTGEITS RKFACSREGY RANVKRGNHM VPMPDSRTGC NAHLVIRRKK PGAKLEVYAF  300
QPRHNHPLFA TSCMPNPLQP NVVHWTTLLD AVTPPDLLMD GENIMDKSSG TTAKESKKKG  360
QKNKIQSRNC IEKGLRKKQK VHSEQPSEYA LLGGSQSGNM FQAFEGPPNM SPLGTQTPTY  420
KTYRGIDLSS PMGPISYDEM PSGLDPTFTT VLQPITLLRC QVAAHTTSKA NVKDYPISIR  480
SSIQQLLYII QLIMPNGAAI FPIGICSTGT VAQANL

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G07500.1	3e-17	FAR1 family protein

Link Out ? help Back to Top
Ensembl	ONIVA04G10490.1