PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

ONIVA04G11980.1

Organism

Oryza sativa f. spontanea

Taxonomic ID

4536

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa

Family

MIKC_MADS

Protein Properties

Length: 158aa MW: 18511.8 Da PI: 9.2348

Description

MIKC_MADS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
ONIVA04G11980.1	genome	EnsemblPlants	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	SRF-TF	42.1	1.1e-13	10	38	2	30
---SHHHHHHHHHHHHHHHHHHHHHHHHH CS SRF-TF 2 rienksnrqvtfskRrngilKKAeELSvL 30 rien rqv f+kRr g+lKKA+ELSvL ONIVA04G11980.1 10 RIENPVHRQVIFCKRRMGLLKKAKELSVL 38 8***************************9 PP
2	K-box	58.7	2.5e-20	64	148	14	97
K-box 14 aeslqqelakLkkeienLqreqRhllGe.dLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenkaLrkk 97 qq++ L++e++ Lq+++R + Ge d++ ++l eLq+Le++Le +++iRs+K++l+ ++ie l++ke l+ +n L+++ ONIVA04G11980.1 64 PMVIQQDVLFLRREVDLLQNSLRYMYGEkDINHMNLGELQSLESNLEVWVNNIRSTKMQLMSREIEMLKNKEGILKAANDILQER 148 45579********************868************************************************99986 PP

Sequence ? help Back to Top
Protein Sequence Length: 158 aa Download sequence
MARGKVQMRR IENPVHRQVI FCKRRMGLLK KAKELSVLNM EGLIERYKCN LPEAQVESTE 60 QNIPMVIQQD VLFLRREVDL LQNSLRYMYG EKDINHMNLG ELQSLESNLE VWVNNIRSTK 120 MQLMSREIEM LKNKEGILKA ANDILQERVL LAINSCIL

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G71692.1	2e-36	MIKC_MADS family protein

Link Out ? help Back to Top
Ensembl	ONIVA04G11980.1