PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID ONIVA04G12350.1
Organism
Oryza sativa f. spontanea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
Family GRAS
Protein Properties Length: 152aa    MW: 16559.1 Da    PI: 9.7065
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
ONIVA04G12350.1genomeEnsemblPlantsView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS49.95.9e-16266259323
             GRAS 259 ealeyysalfdsl.eaklpreseerikvErellgreivnvvacegaerrerhetlekWrerleeaG 323
                      + l+yy+a fd++ +a+l ++s +r+kvE++ ++rei+n+va egaer+erhe+++  r+r+e+ G
  ONIVA04G12350.1   2 HYLRYYAAAFDAVdAAGLLETSPARAKVEEM-FAREIRNAVAFEGAERFERHESFAGRRRRMEDGG 66 
                      679**********9999**************.******************************9976 PP
Sequence ? help Back to Top
Protein Sequence    Length: 152 aa     Download sequence    
MHYLRYYAAA FDAVDAAGLL ETSPARAKVE EMFAREIRNA VAFEGAERFE RHESFAGRRR  60
RMEDGGGLQW GSKAEEKCLL PSSSLARRPR RQPSPPVSLR PDGSLPPAVA AAPLVLPLPR  120
ASAAEPPRCA PMPPTAAPLV LPPPLPTEKE RI
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
14861RFERHESFAGRRRR
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G63100.11e-06GRAS family protein