PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID ONIVA04G15000.2
Organism
Oryza sativa f. spontanea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
Family bHLH
Protein Properties Length: 291aa    MW: 31686.3 Da    PI: 9.5256
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
ONIVA04G15000.2genomeEnsemblPlantsView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH36.77.4e-12219264655
                      HHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
              HLH   6 nerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                      +++Er RR ri +++ +L+ l+P+     +k  s +++L +Av++Ik Lq
  ONIVA04G15000.2 219 SIAERERRTRISEKLRKLQALVPNM----DKQTSTSDMLDLAVDHIKGLQ 264
                      689*********************7....688*****************9 PP
Sequence ? help Back to Top
Protein Sequence    Length: 291 aa     Download sequence    
MRAPDDDDRG IIHSGFILTR WLPGWGEWKS VARGAKAINS LTYLSIAVRS IVNGFSSSAR  60
PAGSSLGEVR HGAMSSSSSN NKKMKAPLSF ASSRQGSGGL SQISEDGIPD LTDSIHGAAH  120
HHGRSEENVS THDHVVRSFS SGGFSIGSWE DSNSIVFSTS TGKSGAHGND DIIATLSNYE  180
SQLVAPREMA GVEKYLQMQH DQVPFRVRAK RGCATHPRSI AERERRTRIS EKLRKLQALV  240
PNMDKQTSTS DMLDLAVDHI KGLQSQLQTL KEDKEKCTCS CKQASRNRPA D
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G05805.13e-45bHLH family protein