PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID ONIVA04G17140.1
Organism
Oryza sativa f. spontanea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
Family MYB
Protein Properties Length: 262aa    MW: 28331.8 Da    PI: 7.0035
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
ONIVA04G17140.1genomeEnsemblPlantsView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding54.72.3e-171461148
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                     +g+WTteEd+ lv  ++++G g+W++ ++  g+ R++k+c++rw +yl
  ONIVA04G17140.1 14 KGPWTTEEDKVLVAHIQRHGHGNWRALPKQAGLLRCGKSCRLRWINYL 61
                     79******************************99************97 PP
2Myb_DNA-binding52.51.1e-1667112148
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                      rg++++eE++ +++++++lG++ W++Ia++++ gRt++++k+ w++yl
  ONIVA04G17140.1  67 RGNFSKEEEDTIIHLHELLGNR-WSAIAARLP-GRTDNEIKNVWHTYL 112
                      89********************.*********.*************97 PP
Sequence ? help Back to Top
Protein Sequence    Length: 262 aa     Download sequence    
MGRAPCCEKM GLKKGPWTTE EDKVLVAHIQ RHGHGNWRAL PKQAGLLRCG KSCRLRWINY  60
LRPDIKRGNF SKEEEDTIIH LHELLGNRWS AIAARLPGRT DNEIKNVWHT YLKKRLDAPA  120
QGGHVAASGG KKHKKPKSAK KPAAAAAAAP PASPERSASS SVTESSMASS VAEEHGNAGI  180
SSASASASAS VCAKEESSFT SASEEFQIDD SFWSETLSMP LDGYDVSMEP GDAFVAPPSA  240
DDMDYWLGVF MESGEAQDLP QI
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G23250.11e-73MYB family protein