PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID ONIVA04G18650.1
Organism
Oryza sativa f. spontanea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
Family Trihelix
Protein Properties Length: 209aa    MW: 22664.9 Da    PI: 10.7441
Description Trihelix family protein
Gene Model
Gene Model ID Type Source Coding Sequence
ONIVA04G18650.1genomeEnsemblPlantsView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1trihelix29.52e-092485165
         trihelix  1 rWtkqevlaLiearremeerlrrgklkkplWeevskkmrergferspkqCkekwenlnkrykkik 65
                     +Wt +e+laL +a++ +  +++r+ l  ++W++v+++      ++++ qC++k e+l++r +  +
  ONIVA04G18650.1 24 CWTPDETLALARAYTARRLAVGRAHLTSADWAAVADAATP---TKTARQCRHKVEKLRRRLRSKR 85
                     8**********************************98766...57889***********998766 PP
Sequence ? help Back to Top
Protein Sequence    Length: 209 aa     Download sequence    
MASSSPTNAA AAAAAAARRV PPPCWTPDET LALARAYTAR RLAVGRAHLT SADWAAVADA  60
ATPTKTARQC RHKVEKLRRR LRSKRRRPCP LLDAIDLLDG PSPSASPSQS PSPPPPASPP  120
PLPPAPSSPP PKKRRLPDAD ADADAEDDGE SDVVKALRAI GEGFLRAEQR RMEAARKTQQ  180
MRMEMALRHL DSQRRLMEAL VDRIIDSLE
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
17682KLRRRLR
27783LRRRLRS