PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID ONIVA04G19000.1
Organism
Oryza sativa f. spontanea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
Family HD-ZIP
Protein Properties Length: 247aa    MW: 27305.1 Da    PI: 8.9349
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
ONIVA04G19000.1genomeEnsemblPlantsView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox60.82.1e-1981135256
                      T--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
         Homeobox   2 rkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 
                      rk+ +++k+q  +Le+ F+++++++ ++++ LA++lgL  rqV vWFqNrRa+ k
  ONIVA04G19000.1  81 RKKLRLSKDQSAVLEDSFREHPTLNPRQKATLAQQLGLRPRQVEVWFQNRRARTK 135
                      788899***********************************************98 PP
2HD-ZIP_I/II1292e-4181170191
      HD-ZIP_I/II   1 ekkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLreel 91 
                      +kk+rlsk+q+++LE+sF+e+ +L+p++K++la++Lgl+prqv+vWFqnrRARtk+kq+E+d+e+Lkr++++l+een+rL+kev+eLr +l
  ONIVA04G19000.1  81 RKKLRLSKDQSAVLEDSFREHPTLNPRQKATLAQQLGLRPRQVEVWFQNRRARTKLKQTEVDCEFLKRCCETLTEENRRLQKEVQELR-AL 170
                      69*************************************************************************************9.55 PP
Sequence ? help Back to Top
Protein Sequence    Length: 247 aa     Download sequence    
MMERAEDLRL SLSLSSPLIA PRTHHVAMLF HAPPEKRFLE MPLLPAAKRS EVVAAEEERA  60
GLRGGGGSDE EDGGCGIDGS RKKLRLSKDQ SAVLEDSFRE HPTLNPRQKA TLAQQLGLRP  120
RQVEVWFQNR RARTKLKQTE VDCEFLKRCC ETLTEENRRL QKEVQELRAL KLVSPHLYMN  180
MSPPTTLTMC PSCERVSNTN NNSSAAAAAD RRGIRTTTAA AGGSVVDTAA DGGILCHRPI  240
AVRPQQS
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
18086SRKKLRL
2130138RRARTKLKQ
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G44910.13e-65HD-ZIP family protein