PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

ONIVA04G19300.1

Organism

Oryza sativa f. spontanea

Taxonomic ID

4536

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa

Family

C3H

Protein Properties

Length: 496aa MW: 51674.6 Da PI: 4.5402

Description

C3H family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
ONIVA04G19300.1	genome	EnsemblPlants	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-CCCH	23.8	7.7e-08	379	405	2	27
-S---SGGGGTS.--TTTTT-SS-SSS CS zf-CCCH 2 ktelCrffartG.tCkyGdrCkFaHgp 27 kt+lC ++ G C++G++Ck+aHg+ ONIVA04G19300.1 379 KTKLCAEYYSRGlGCPRGNTCKYAHGE 405 7999988888888************96 PP
2	zf-CCCH	26.3	1.2e-08	440	466	1	27
--S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHgp 27 ykt+lC++f +G C + ++C+FaHg+ ONIVA04G19300.1 440 YKTKLCKTFTSGGLCLFAANCRFAHGE 466 9************************96 PP

Sequence ? help Back to Top
Protein Sequence Length: 496 aa Download sequence
MADSEDGDHA ATTTTEQRYD DDGHLVPSSG GQEEEGSGGR DVVVPGGHVA EDYRSGVGVP 60 VGRDAGGATS SPPQPVHVTP SILVGSIHAP VFQGELVGMK FGVGSCSMGA GTSATRRLPA 120 TGFGALPTSS MAEDSADHAD DDHLAEEEEE EEEEHYIDDG PLVPSSGGQE EEGSGGRHVF 180 VPGGHDGEED HPDDLVADLD LDLLVDGVVG PVPGGHLNAD APAFVPTTRG RQDLYSALSS 240 SAPAAGYRYR HYITSSALAE AGHVSPFLGL PYATAFDSPL DRELVGPSSA PPPCSAASRA 300 WLVRCSSPLS DSEWTRRSIL AREAAHTPAS TVTGRGRFEF VPIPGAPYAP PPSFAPIAAG 360 AGPAARPQQQ LAFGLEEHKT KLCAEYYSRG LGCPRGNTCK YAHGEDDLRL VVAVSSLADA 420 GEGSSSSDSS SAALGGEDKY KTKLCKTFTS GGLCLFAANC RFAHGEVELG KKEPCWYFFS 480 GQTCPRGDTC GFRHSY

Sequence ? help Back to Top

Protein Sequence Length: 496 aa Download sequence

MADSEDGDHA ATTTTEQRYD DDGHLVPSSG GQEEEGSGGR DVVVPGGHVA EDYRSGVGVP  60
VGRDAGGATS SPPQPVHVTP SILVGSIHAP VFQGELVGMK FGVGSCSMGA GTSATRRLPA  120
TGFGALPTSS MAEDSADHAD DDHLAEEEEE EEEEHYIDDG PLVPSSGGQE EEGSGGRHVF  180
VPGGHDGEED HPDDLVADLD LDLLVDGVVG PVPGGHLNAD APAFVPTTRG RQDLYSALSS  240
SAPAAGYRYR HYITSSALAE AGHVSPFLGL PYATAFDSPL DRELVGPSSA PPPCSAASRA  300
WLVRCSSPLS DSEWTRRSIL AREAAHTPAS TVTGRGRFEF VPIPGAPYAP PPSFAPIAAG  360
AGPAARPQQQ LAFGLEEHKT KLCAEYYSRG LGCPRGNTCK YAHGEDDLRL VVAVSSLADA  420
GEGSSSSDSS SAALGGEDKY KTKLCKTFTS GGLCLFAANC RFAHGEVELG KKEPCWYFFS  480
GQTCPRGDTC GFRHSY

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G66810.1	3e-08	C3H family protein

Link Out ? help Back to Top
Ensembl	ONIVA04G19300.1