PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

ONIVA04G19650.1

Organism

Oryza sativa f. spontanea

Taxonomic ID

4536

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa

Family

bHLH

Protein Properties

Length: 548aa MW: 59858 Da PI: 5.0261

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
ONIVA04G19650.1	genome	EnsemblPlants	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	40.6	4.5e-13	372	418	3	54
HHHHHHHHHHHHHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHH CS HLH 3 rahnerErrRRdriNsafeeLrellPk.askapskKlsKaeiLekAveYIksL 54 ++h + ErrRR+++N+ f L++++P+ K++Ka+iLe+++ Y+k L ONIVA04G19650.1 372 KNHVISERRRREKLNEMFLILKSIVPSiH------KVDKASILEETIAYLKVL 418 57999********************66......*************977 PP

Sequence ? help Back to Top
Protein Sequence Length: 548 aa Download sequence
MASAPPVQEE ALQPGTNHFR SLLAAAVRSI SWSYAIFWSI SNSCPGVLTW NDGFYNGVVK 60 TRKISNSADL TAGQLVVQRS EQLRELYYSL LSGECDHRAR RPIAALSPED LADTEWYYVV 120 CMTYSFQPGQ GLPGKSYASN ASVWLRNAQS ADSKTFLRSL LAKTIICIPF TSGVLELGTT 180 DPVLEDPNLV NRIVAYFQEL QFPICLEVLM STSPSPNETE DADIVSEGLI THNAIEEGQM 240 VVSDECVSNA NRDPITMEID ELYSIYEDLD LDTVRFLEDN GWPVNPSSFQ LVSASSTEAV 300 AAAAAANDVD GVANSQVSCF MAWKSAKSNE MAVPVVTGIE SQKLLKKVVD CGARMSTGRG 360 SRAALTQESG IKNHVISERR RREKLNEMFL ILKSIVPSIH KVDKASILEE TIAYLKVLEK 420 RVKELESSSE RSHQRATETG QQRRCEITGK ELVSEIGVSG GGDAGREHHH VNVTVTDKVV 480 LLEVQCRWKE LVMTRVFDAI KSLCLDVLSV QASAPDGLLG LKIQAKFACS GSVAPGMISE 540 ALQKAIGG

Sequence ? help Back to Top

Protein Sequence Length: 548 aa Download sequence

MASAPPVQEE ALQPGTNHFR SLLAAAVRSI SWSYAIFWSI SNSCPGVLTW NDGFYNGVVK  60
TRKISNSADL TAGQLVVQRS EQLRELYYSL LSGECDHRAR RPIAALSPED LADTEWYYVV  120
CMTYSFQPGQ GLPGKSYASN ASVWLRNAQS ADSKTFLRSL LAKTIICIPF TSGVLELGTT  180
DPVLEDPNLV NRIVAYFQEL QFPICLEVLM STSPSPNETE DADIVSEGLI THNAIEEGQM  240
VVSDECVSNA NRDPITMEID ELYSIYEDLD LDTVRFLEDN GWPVNPSSFQ LVSASSTEAV  300
AAAAAANDVD GVANSQVSCF MAWKSAKSNE MAVPVVTGIE SQKLLKKVVD CGARMSTGRG  360
SRAALTQESG IKNHVISERR RREKLNEMFL ILKSIVPSIH KVDKASILEE TIAYLKVLEK  420
RVKELESSSE RSHQRATETG QQRRCEITGK ELVSEIGVSG GGDAGREHHH VNVTVTDKVV  480
LLEVQCRWKE LVMTRVFDAI KSLCLDVLSV QASAPDGLLG LKIQAKFACS GSVAPGMISE  540
ALQKAIGG

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	378	383	ERRRRE
2	379	384	RRRREK

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G09820.1	7e-80	bHLH family protein

Link Out ? help Back to Top
Ensembl	ONIVA04G19650.1