PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

ONIVA04G19860.1

Organism

Oryza sativa f. spontanea

Taxonomic ID

4536

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa

Family

bHLH

Protein Properties

Length: 443aa MW: 48983.4 Da PI: 4.7906

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
ONIVA04G19860.1	genome	EnsemblPlants	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	40.9	3.8e-13	369	415	3	54
HHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS HLH 3 rahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 ++h + ErrRR+++N+ f L++llP+ +K++Ka+iL +++ Y+k L ONIVA04G19860.1 369 KSHVMSERRRREKLNEMFLILKSLLPSV-----RKVDKASILAETITYLKVL 415 5899*********************7.....6*************977 PP

Sequence ? help Back to Top
Protein Sequence Length: 443 aa Download sequence
MASAPPVQEE ALQPGTNHFR SRLAAAVRSI SWSYTIFWST STSLPGVLTW NDGFYNGEVK 60 TRKISNLEDH TADQLVLRRS EQLRELYYSL LSGECDHRAR KPVAALSPED IADTEWYYVV 120 CMTYAFRPGQ GLPGRSYASN RSVWLCNAQS ADSKTFLRAL LAKTIVCIPF MSGVLELGTT 180 DPVSEDPNLV NRIVAYLKEL QFPICLEVPS STPSLDETED ADTVFDGLIE EHQMVILQGE 240 DELGDVVVAE CETNGANPET ITMETDEFYS LCEELDLDLG SYQLVPTSAR ETVAAAANDV 300 DGVAYSHASC FVSWKRANPA EKVVAVPMTA GIESQKLLKK AVGGGTAWMS NIDDRGSVAI 360 TTTPGSNIKS HVMSERRRRE KLNEMFLILK SLLPSVRKVD KASILAETIT YLKVLEKRVK 420 ELESSSREPS RWRPTEIGQG KAP

Sequence ? help Back to Top

Protein Sequence Length: 443 aa Download sequence

MASAPPVQEE ALQPGTNHFR SRLAAAVRSI SWSYTIFWST STSLPGVLTW NDGFYNGEVK  60
TRKISNLEDH TADQLVLRRS EQLRELYYSL LSGECDHRAR KPVAALSPED IADTEWYYVV  120
CMTYAFRPGQ GLPGRSYASN RSVWLCNAQS ADSKTFLRAL LAKTIVCIPF MSGVLELGTT  180
DPVSEDPNLV NRIVAYLKEL QFPICLEVPS STPSLDETED ADTVFDGLIE EHQMVILQGE  240
DELGDVVVAE CETNGANPET ITMETDEFYS LCEELDLDLG SYQLVPTSAR ETVAAAANDV  300
DGVAYSHASC FVSWKRANPA EKVVAVPMTA GIESQKLLKK AVGGGTAWMS NIDDRGSVAI  360
TTTPGSNIKS HVMSERRRRE KLNEMFLILK SLLPSVRKVD KASILAETIT YLKVLEKRVK  420
ELESSSREPS RWRPTEIGQG KAP

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	375	380	ERRRRE
2	376	381	RRRREK

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G09820.1	5e-67	bHLH family protein

Link Out ? help Back to Top
Ensembl	ONIVA04G19860.1