PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

ONIVA04G21020.1

Organism

Oryza sativa f. spontanea

Taxonomic ID

4536

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa

Family

GRF

Protein Properties

Length: 237aa MW: 25041.6 Da PI: 10.24

Description

GRF family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
ONIVA04G21020.1	genome	EnsemblPlants	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	WRC	79.9	2.3e-25	141	185	1	45
WRC 1 daepgrCrRtDGKkWRCsrrvlegkklCErHlhrgrsrsrkskee 45 ++epgrCrRtDGKkWRCsr+v++g+k+CErH+hrgr rsrk++e+ ONIVA04G21020.1 141 EPEPGRCRRTDGKKWRCSRDVVPGHKYCERHVHRGRGRSRKPMEA 185 69***************************************9987 PP
2	QLQ	54.2	4.5e-19	74	110	1	37
QLQ 1 saFTaaQlqlLksQilAyKyLaanqPvPpeLlqaiqk 37 sa+T +Q q+L++Q+l+y+y+aa++PvP +L+++i+k ONIVA04G21020.1 74 SALTFMQRQELEQQVLIYRYFAAGAPVPVHLVLPIWK 110 799*********************************7 PP

Sequence ? help Back to Top
Protein Sequence Length: 237 aa Download sequence
MLAEGRQVYS PPPPPPSKLP RLSGTDPTDG VVTMAAPSPL VLGLGLGLGG SGSDSSGSDA 60 EASAATVREA RPPSALTFMQ RQELEQQVLI YRYFAAGAPV PVHLVLPIWK SIAAASSFGP 120 QSFPSLTGLG SLCFDYRSSM EPEPGRCRRT DGKKWRCSRD VVPGHKYCER HVHRGRGRSR 180 KPMEASAAVA PTYLPVRPAL HTVATLATSA PSLSHLGFSS ASKVLLAHTT TGTTRAT

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	175	183	GRGRSRKPM

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G36400.1	2e-37	GRF family protein

Link Out ? help Back to Top
Ensembl	ONIVA04G21020.1