PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

ONIVA04G21490.1

Organism

Oryza sativa f. spontanea

Taxonomic ID

4536

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa

Family

YABBY

Protein Properties

Length: 309aa MW: 32487 Da PI: 8.8229

Description

YABBY family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
ONIVA04G21490.1	genome	EnsemblPlants	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	YABBY	77.8	3.3e-24	54	105	4	55
YABBY 4 fssseqvCyvqCnfCntilavsvPstslfkvvtvrCGhCtsllsvnlakasq 55 +s eq+Cyv+C +C+t+l+vsvPs+slfk+vtvrCGhC+sll+vn++ ONIVA04G21490.1 54 DSEQEQLCYVHCHYCDTVLVVSVPSSSLFKTVTVRCGHCSSLLTVNMRGLLL 105 56789***************************************99987664 PP
2	YABBY	132.4	5.9e-41	195	263	104	170
YABBY 104 nedeevprvpp..virPPekrqrvPsaynrfikeeiqrikasnPdishreafsaaaknWahfPkihfgl 170 +e +pr+ ++rPPekrqrvPsaynrfik+eiqrika+nPdishreafsaaaknWahfP+ihfgl ONIVA04G21490.1 195 AAKEPSPRTNTavINRPPEKRQRVPSAYNRFIKDEIQRIKAGNPDISHREAFSAAAKNWAHFPHIHFGL 263 445556665554489****************************************************97 PP

Sequence ? help Back to Top
Protein Sequence Length: 309 aa Download sequence
MSSSSSSSAS SAAAAAFRPA VVQREQQVVE EKFPAAAAAM REMVLPPVAA AAADSEQEQL 60 CYVHCHYCDT VLVVSVPSSS LFKTVTVRCG HCSSLLTVNM RGLLLPTTAA AAPPPPPPPP 120 PPAAHFPHSL NLAPANPPHH HSLLDEISTA NSPTQLLLEQ HGLGGLMASA ASCRNNNSPA 180 AAAALPPPTS QGKAAAKEPS PRTNTAVINR PPEKRQRVPS AYNRFIKDEI QRIKAGNPDI 240 SHREAFSAAA KNWAHFPHIH FGLMPDHQGL KKTSLLPQDH QRKDGLLKEG LYAAAAAAAA 300 AANMGVAPY

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G45190.1	2e-44	YABBY family protein

Link Out ? help Back to Top
Ensembl	ONIVA04G21490.1