PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

ONIVA04G21750.1

Organism

Oryza sativa f. spontanea

Taxonomic ID

4536

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa

Family

C3H

Protein Properties

Length: 1258aa MW: 136894 Da PI: 6.7117

Description

C3H family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
ONIVA04G21750.1	genome	EnsemblPlants	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-CCCH	18.5	3.5e-06	1238	1257	5	25
--SGGGGTS--TTTTT-SS-S CS zf-CCCH 5 lCrffartGtCkyGdrCkFaH 25 +Cr ++++G+C+ G +C+F H ONIVA04G21750.1 1238 ICR-YYENGYCRKGTSCQFLH 1257 799.6666************* PP

Sequence ? help Back to Top
Protein Sequence Length: 1258 aa Download sequence
MLKLLEMHFH AKETVNGDGQ KGIDSDSAQI DSGGYSDMPS KLCSDNKRKI HKKIERESPA 60 NLEDYAAIDM HNINLIYLRR SLLEDLIDDN GTFSDKITGA FVRIRTPCVG QKQDIYRLVK 120 VLGTHKVAER YSVGKKTTDH ALEILNLDKK EEECKRLRQS MKCGLITRLK VGDIHEKAKI 180 FQLLRVNDWL ENEKQRLSHL RDRAKKLQLL GTPEERARII NEDPEVHADP CMSPDYESAE 240 ELDAKKAVDS TSRNGSDLLF LGRKGIETNS LQNHRQNCSA TSHHTTTSPP TEGMTHGQGE 300 EASFASSEIV SGDMEPEKVW HYKDPSGSVQ GPFTLLQLSK WAAYFPRDLR IWLTFESEQN 360 SLLLNEVLSK QQKDFIQPSP KVDNNRSTWE GVGQDRVDSS LTGNNSSSPI GYNVIYSSRL 420 PSPSADYRAS AREGPNLPSG TLPFMTSQKT QKDPQMLHGQ AQHQGDYSCT IPSSVVSYRP 480 AGSHDEWPPR GNIGEWNNSQ DSGGMWSPTT PHMSRSNLEH QPDRCITKKQ LQNDSKRNTL 540 AGSAENLNSQ MDFGSQKVHI PTPQQPERDL ATSVGTSRQF EFKTCHQEGS HWSSTADSIT 600 HDGLQLSLAS AKPESCSAVN PIRDGDSSSA SRVPNQSGAH VYSPPHPATT NLSKSEETMN 660 QCKSCEPEAS NKSRKPDASH APVNQHPKPE SDPVLPDTQD FERTHPSPST EHDTKEQLKD 720 QSRSTSVAPE GSGTKAHGQS SIAFISEASG PLSSKIVGLQ PPKDTSFLVE RDIKDGGSIT 780 QTEQQKEEST AFKKENVAVD PISDSEAIVS GVLESLTETY NLHEETALEN FTPTSAEEEQ 840 PQCSTPIALS PWDETSDYQG EAVDSALWGV QDDQNNEMWS LSSPTPTLQP SGIGADTKGA 900 SCAIEEVIVA QGNSGVVEPS PALEKKRIEK VPSASIDRGV PEQVKPKSDA ALSPEESRKP 960 SGLQLSSTYL QGSTKSSGLP PSGTSLDGGI EPSGLLPSGT SLEWGTKISG VQSSASSLEG 1020 SKKAFVRQPS GSSLEGNTKA SGRQPSGSSI EGSKKPSDRQ PSGASQEGNT KPSGWQQSVS 1080 SLEGGTKPSG WKPSISIDTN TKASGSSKAS GWQPSPRESS KSKPNSTWGA GQSRNSSSHQ 1140 STTPTAKYSS ETPRRQGNNN TNSAGWGDSL GNKSWHSPSG NASSRGSHSS HHHDRHNQSS 1200 EPWRGGSNHS RRSDHRQEHG NGGSSRSSSS RGQSQRGICR YYENGYCRKG TSCQFLHR

Sequence ? help Back to Top

Protein Sequence Length: 1258 aa Download sequence

MLKLLEMHFH AKETVNGDGQ KGIDSDSAQI DSGGYSDMPS KLCSDNKRKI HKKIERESPA  60
NLEDYAAIDM HNINLIYLRR SLLEDLIDDN GTFSDKITGA FVRIRTPCVG QKQDIYRLVK  120
VLGTHKVAER YSVGKKTTDH ALEILNLDKK EEECKRLRQS MKCGLITRLK VGDIHEKAKI  180
FQLLRVNDWL ENEKQRLSHL RDRAKKLQLL GTPEERARII NEDPEVHADP CMSPDYESAE  240
ELDAKKAVDS TSRNGSDLLF LGRKGIETNS LQNHRQNCSA TSHHTTTSPP TEGMTHGQGE  300
EASFASSEIV SGDMEPEKVW HYKDPSGSVQ GPFTLLQLSK WAAYFPRDLR IWLTFESEQN  360
SLLLNEVLSK QQKDFIQPSP KVDNNRSTWE GVGQDRVDSS LTGNNSSSPI GYNVIYSSRL  420
PSPSADYRAS AREGPNLPSG TLPFMTSQKT QKDPQMLHGQ AQHQGDYSCT IPSSVVSYRP  480
AGSHDEWPPR GNIGEWNNSQ DSGGMWSPTT PHMSRSNLEH QPDRCITKKQ LQNDSKRNTL  540
AGSAENLNSQ MDFGSQKVHI PTPQQPERDL ATSVGTSRQF EFKTCHQEGS HWSSTADSIT  600
HDGLQLSLAS AKPESCSAVN PIRDGDSSSA SRVPNQSGAH VYSPPHPATT NLSKSEETMN  660
QCKSCEPEAS NKSRKPDASH APVNQHPKPE SDPVLPDTQD FERTHPSPST EHDTKEQLKD  720
QSRSTSVAPE GSGTKAHGQS SIAFISEASG PLSSKIVGLQ PPKDTSFLVE RDIKDGGSIT  780
QTEQQKEEST AFKKENVAVD PISDSEAIVS GVLESLTETY NLHEETALEN FTPTSAEEEQ  840
PQCSTPIALS PWDETSDYQG EAVDSALWGV QDDQNNEMWS LSSPTPTLQP SGIGADTKGA  900
SCAIEEVIVA QGNSGVVEPS PALEKKRIEK VPSASIDRGV PEQVKPKSDA ALSPEESRKP  960
SGLQLSSTYL QGSTKSSGLP PSGTSLDGGI EPSGLLPSGT SLEWGTKISG VQSSASSLEG  1020
SKKAFVRQPS GSSLEGNTKA SGRQPSGSSI EGSKKPSDRQ PSGASQEGNT KPSGWQQSVS  1080
SLEGGTKPSG WKPSISIDTN TKASGSSKAS GWQPSPRESS KSKPNSTWGA GQSRNSSSHQ  1140
STTPTAKYSS ETPRRQGNNN TNSAGWGDSL GNKSWHSPSG NASSRGSHSS HHHDRHNQSS  1200
EPWRGGSNHS RRSDHRQEHG NGGSSRSSSS RGQSQRGICR YYENGYCRKG TSCQFLHR

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G51120.1	2e-69	C3H family protein

Link Out ? help Back to Top
Ensembl	ONIVA04G21750.1