PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

ONIVA04G21940.2

Organism

Oryza sativa f. spontanea

Taxonomic ID

4536

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa

Family

MIKC_MADS

Protein Properties

Length: 256aa MW: 28973.9 Da PI: 9.3545

Description

MIKC_MADS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
ONIVA04G21940.2	genome	EnsemblPlants	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	SRF-TF	100.1	8.8e-32	16	65	1	50
S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE CS SRF-TF 1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeys 50 krienk+nrqvtfskRrng+lKKA+ELSvLCdaeva+iifss+gklye+ ONIVA04G21940.2 16 KRIENKINRQVTFSKRRNGLLKKAYELSVLCDAEVALIIFSSRGKLYEFG 65 79**********************************************95 PP
2	K-box	103	3.8e-34	86	180	5	99
K-box 5 sgksleeakaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenkaLrkkl 98 s+++l+ +++s++qe+++Lk ++e Lqr+qRh+lGedL++Ls+keLqqLe+qLe sl++ R++K+++++eq+++l++ke++l e nk+L++kl ONIVA04G21940.2 86 SNSALAGGEHQSWYQEMSRLKTKLECLQRSQRHMLGEDLGPLSIKELQQLEKQLEYSLSQARQRKTQIMMEQVDDLRRKERQLGELNKQLKNKL 179 334488899************************************************************************************9 PP K-box 99 e 99 e ONIVA04G21940.2 180 E 180 7 PP

Sequence ? help Back to Top
Protein Sequence Length: 256 aa Download sequence
MVDKSTKMGR GRVELKRIEN KINRQVTFSK RRNGLLKKAY ELSVLCDAEV ALIIFSSRGK 60 LYEFGSAGIN KTLEKYNSCC YNAQGSNSAL AGGEHQSWYQ EMSRLKTKLE CLQRSQRHML 120 GEDLGPLSIK ELQQLEKQLE YSLSQARQRK TQIMMEQVDD LRRKERQLGE LNKQLKNKLE 180 AEADSSNCRS AIQDSWVHGT VVSGGRVLNA QPPPDIDCEP TLQIGYYQFV RPEAANPRSN 240 GGGGDQNNNF VMGWPL

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G45650.1	6e-92	MIKC_MADS family protein

Link Out ? help Back to Top
Ensembl	ONIVA04G21940.2