PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID ONIVA04G24000.1
Organism
Oryza sativa f. spontanea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
Family ERF
Protein Properties Length: 222aa    MW: 22798 Da    PI: 10.2507
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
ONIVA04G24000.1genomeEnsemblPlantsView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP259.48.3e-192474155
              AP2  1 sgykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55
                     ++++GVr ++ +gr++AeIrdp     r +r++lg+f+tae Aa+a++ a++ ++g
  ONIVA04G24000.1 24 PRFRGVRKRP-WGRYAAEIRDP---A-RkARVWLGTFDTAEAAARAYDSAALHFRG 74
                     689*******.**********8...2.35***********************9998 PP
Sequence ? help Back to Top
Protein Sequence    Length: 222 aa     Download sequence    
MAPRNAAEAV AVAVAEGGGA GMEPRFRGVR KRPWGRYAAE IRDPARKARV WLGTFDTAEA  60
AARAYDSAAL HFRGPKAKTN FPVAFAHAHH HAPPPPLPKA AALAVVSPTS STVESSSRDT  120
PAAAPVAAAA KAQVPASPSL DLSLGMSAMV AAQPFLFLDP RVAVTVAVAA PVPRRPAVVS  180
VKKEVARLDE QSDTGSSSSV VDASPAVGVG LDLNLPPPIE EA
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G28370.16e-20ERF family protein