PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID ONIVA04G24530.1
Organism
Oryza sativa f. spontanea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
Family bHLH
Protein Properties Length: 223aa    MW: 25411.8 Da    PI: 8.446
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
ONIVA04G24530.1genomeEnsemblPlantsView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH55.21.3e-1759105455
                      HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
              HLH   4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                       hn  ErrRRdriN+++  L+ellP++     +K +K+++L +A++Y+ksLq
  ONIVA04G24530.1  59 FHNFSERRRRDRINEKLKALQELLPNC-----TKTDKVSMLDEAIDYLKSLQ 105
                      59*************************.....9******************9 PP
Sequence ? help Back to Top
Protein Sequence    Length: 223 aa     Download sequence    
MEGIIKIDAS LGLDQLAAIG SLYQFIRGGG EGKEAASQEE EQTPKLRPTP TRRSRSAEFH  60
NFSERRRRDR INEKLKALQE LLPNCTKTDK VSMLDEAIDY LKSLQLQLQM LVMGKGMAPV  120
VPPELQQYMH YITADPSQIP PIRPSEPRPF QITHATQQRQ SNVESDFLSQ MQNLHPSEPP  180
QNFLRPPKLQ LYTPEQQRRG LASSSGHNSG WITERNSSYN FLE
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
16469ERRRRD
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G20180.15e-32bHLH family protein