PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

ONIVA04G25940.1

Organism

Oryza sativa f. spontanea

Taxonomic ID

4536

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa

Family

WOX

Protein Properties

Length: 236aa MW: 25783.5 Da PI: 9.7874

Description

WOX family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
ONIVA04G25940.1	genome	EnsemblPlants	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	60.9	2e-19	91	150	3	57
--SS--HHHHHHHHHHHHH.SSS--HHHHHHHHHHC....TS-HHHHHHHHHHHHHHHHC CS Homeobox 3 kRttftkeqleeLeelFek.nrypsaeereeLAkkl....gLterqVkvWFqNrRakekk 57 +R+++++eq+++Le l++ r+p+ ++e+++++l +++ ++V++WFqN++a+e++ ONIVA04G25940.1 91 TRWNPSAEQIKVLEMLYRGgMRTPNSVQIERITEELgkygRIEGKNVFYWFQNHKARERQ 150 8***************99************************************97 PP
2	Wus_type_Homeobox	115.9	1.9e-37	90	152	3	65
Wus_type_Homeobox 3 rtRWtPtpeQikiLeelyksGlrtPnkeeiqritaeLeeyGkiedkNVfyWFQNrkaRerqkq 65 +tRW+P++eQik+Le+ly+ G+rtPn+ +i+rit+eL +yG+ie+kNVfyWFQN+kaRerqkq ONIVA04G25940.1 90 TTRWNPSAEQIKVLEMLYRGGMRTPNSVQIERITEELGKYGRIEGKNVFYWFQNHKARERQKQ 152 79***********************************************************97 PP

Sequence ? help Back to Top
Protein Sequence Length: 236 aa Download sequence
MRLHHLHVAY LDHKASSSSS SPAPPSISPS SIPGSAAFPA FSFKCLRPLA PKISLPEPRK 60 MIAPPDFVVP RARNASKLLN YTVQVPAAGT TRWNPSAEQI KVLEMLYRGG MRTPNSVQIE 120 RITEELGKYG RIEGKNVFYW FQNHKARERQ KQKRAALLTL STLDPSLLPA TANETKEAPE 180 KKEKDVEDGL ASCKRRCKAW GDGAGDGDAV VATEAAGGCT DEVTLELFPL HPQGKA

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G46480.1	9e-38	WOX family protein

Link Out ? help Back to Top
Ensembl	ONIVA04G25940.1