PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID ONIVA04G26260.1
Organism
Oryza sativa f. spontanea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
Family AP2
Protein Properties Length: 492aa    MW: 53217.8 Da    PI: 6.231
Description AP2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
ONIVA04G26260.1genomeEnsemblPlantsView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP236.89.9e-12143199155
              AP2   1 sgykGVrwdkkrgrWvAeIrd.pseng..kr.krfslgkfgtaeeAakaaiaarkkleg 55 
                      s y+GV++++++gr++A+++d  +     ++ k  + g ++ +e+Aa+a++ a++k++g
  ONIVA04G26260.1 143 SIYRGVTRHRWTGRYEAHLWDnSCR-RegQSrKGRQ-GGYDKEEKAARAYDLAALKYWG 199
                      57*******************5444.2455536655.779999**************98 PP
2AP252.21.5e-16242293155
              AP2   1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                      s y+GV+++++ grW A+I  +     +k  +lg+fgt+eeAa+a++ a+ k++g
  ONIVA04G26260.1 242 SIYRGVTRHHQHGRWQARIGRVAG---NKDLYLGTFGTEEEAAEAYDIAAIKFRG 293
                      57****************988532...5************************998 PP
Sequence ? help Back to Top
Protein Sequence    Length: 492 aa     Download sequence    
MDMDTSHHYP WLNFSLAHHC EMEEEERGAA AELAAIAGAA PPPKLEDFLG GGCNGGSSGG  60
ACPPVQTTAP TAAELYESEL KFLAAGFQLS GAAGAAPPVP ALLPAAALEQ TDETKQLALP  120
PRAAVAPPPE QKKAVDSFGQ RTSIYRGVTR HRWTGRYEAH LWDNSCRREG QSRKGRQGGY  180
DKEEKAARAY DLAALKYWGP STTTNFPVAE YEKELEEMKH MTRQEFVASL RRKSSGFSRG  240
ASIYRGVTRH HQHGRWQARI GRVAGNKDLY LGTFGTEEEA AEAYDIAAIK FRGLNAVTNF  300
EIGRYNVESI ISSNLPIGSM AGNRSTKAGL ELAPSSSADA IAATEANHTG VAPPSTLAFT  360
ALPMKYDQAD YLSYLALQHH QQGNLHGLGF GLYSSGVNLD FANANGNGAM SNCYTNVSLH  420
EQQQQHQHQH QQEQQQDQQD DQSQSSNNSC GSIPFATPIA FSGSYESSMT AAGTFGYYPN  480
VAAFQTPIFG ME
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G57390.11e-122AP2 family protein