PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID ONIVA04G27090.1
Organism
Oryza sativa f. spontanea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
Family WOX
Protein Properties Length: 288aa    MW: 30564.8 Da    PI: 7.934
Description WOX family protein
Gene Model
Gene Model ID Type Source Coding Sequence
ONIVA04G27090.1genomeEnsemblPlantsView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox59.84.3e-193494357
                     --SS--HHHHHHHHHHHHH..SSS--HHHHHHHHHHC....TS-HHHHHHHHHHHHHHHHC CS
         Homeobox  3 kRttftkeqleeLeelFek..nrypsaeereeLAkkl....gLterqVkvWFqNrRakekk 57
                     +R+t+t+eq+++L el+++   r p+ e+++++A+ l    +++ ++V++WFqN++a+e++
  ONIVA04G27090.1 34 TRWTPTTEQIKILRELYYScgIRSPNSEQIQRIAAMLrqygRIEGKNVFYWFQNHKARERQ 94
                     7*****************7668*************************************97 PP
2Wus_type_Homeobox114.64.8e-373396365
  Wus_type_Homeobox  3 rtRWtPtpeQikiLeelyk.sGlrtPnkeeiqritaeLeeyGkiedkNVfyWFQNrkaRerqkq 65
                        tRWtPt+eQikiL+ely+ +G+r+Pn+e+iqri+a+L++yG+ie+kNVfyWFQN+kaRerqk+
    ONIVA04G27090.1 33 GTRWTPTTEQIKILRELYYsCGIRSPNSEQIQRIAAMLRQYGRIEGKNVFYWFQNHKARERQKK 96
                       69***************9978*****************************************96 PP
Sequence ? help Back to Top
Protein Sequence    Length: 288 aa     Download sequence    
MDHMQQQQRQ QVGGGGGEEV AGRGGVPVCR PSGTRWTPTT EQIKILRELY YSCGIRSPNS  60
EQIQRIAAML RQYGRIEGKN VFYWFQNHKA RERQKKRLTT LDVTTTTAAA ADADASHLAV  120
LSLSPTAAGA TAPSFPGFYV GNGGAVQTDQ ANVVNWDCTA MAAEKTFLQD YMGVSGGGGA  180
AAAAPTPWAM TTTREPETLP LFPVGGGGGD GAHRHAGHGG FPSNFQRWGS AAATTNTTTV  240
QQHLQQHNFY SSSSSQLHSQ DGPAAGTSLE LTLSSYYCSC SPYPAGSM
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G17950.13e-34WOX family protein