PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

ONIVA04G28760.1

Organism

Oryza sativa f. spontanea

Taxonomic ID

4536

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa

Family

MYB

Protein Properties

Length: 397aa MW: 42044.2 Da PI: 6.9253

Description

MYB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
ONIVA04G28760.1	genome	EnsemblPlants	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	53.5	5.4e-17	14	61	1	48
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 rg W++eEde+l + ++++G g+W+++++ g+ R++k+c++rw +yl ONIVA04G28760.1 14 RGLWSPEEDEKLMNHIAKYGHGCWSSVPKLAGLERCGKSCRLRWINYL 61 788*******************************************97 PP
2	Myb_DNA-binding	46.7	7.4e-15	67	144	1	47
TSSS-HHHHHHHHHHHHHTTTT................................-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGgg................................tWktIartmgkgRtlkqcksrwqky 47 rg +++eE++l+++++ +lG++ +W+ Ia+ ++ gRt++++k++w++y ONIVA04G28760.1 67 RGTFSQEEEDLIIQLHSMLGNKyvlysssthicqslsrsvpsltmaaatatalaRWSQIAAQLP-GRTDNEVKNFWNSY 144 899***********************************************************.**********98 PP

Sequence ? help Back to Top
Protein Sequence Length: 397 aa Download sequence
MAKQSCCHKK KLRRGLWSPE EDEKLMNHIA KYGHGCWSSV PKLAGLERCG KSCRLRWINY 60 LRPDLKRGTF SQEEEDLIIQ LHSMLGNKYV LYSSSTHICQ SLSRSVPSLT MAAATATALA 120 RWSQIAAQLP GRTDNEVKNF WNSYIKKKLR DRGIDPATHK PLAADSSATP TNTTAAAASR 180 STATCRAVFS DAELQIPTAA AVQQQQQAPL VGAMQLVDGI KMPLDDYWPA AAAAAAPSSS 240 TTTFSAYHHA LSMQQQAAAG CGGAAAFDMD ALSHCGVVVA PSASSSSTLT SMAGLSPAAA 300 DAAEQSANVA AAAATTTNLP WLDLGHANPI ATMDHYAGVL DELRWSDYFD GAYQAATTAT 360 QGGALQGQCL YDGGGGGGKD VDDAVQFVDV HSLSNWC

Sequence ? help Back to Top

Protein Sequence Length: 397 aa Download sequence

MAKQSCCHKK KLRRGLWSPE EDEKLMNHIA KYGHGCWSSV PKLAGLERCG KSCRLRWINY  60
LRPDLKRGTF SQEEEDLIIQ LHSMLGNKYV LYSSSTHICQ SLSRSVPSLT MAAATATALA  120
RWSQIAAQLP GRTDNEVKNF WNSYIKKKLR DRGIDPATHK PLAADSSATP TNTTAAAASR  180
STATCRAVFS DAELQIPTAA AVQQQQQAPL VGAMQLVDGI KMPLDDYWPA AAAAAAPSSS  240
TTTFSAYHHA LSMQQQAAAG CGGAAAFDMD ALSHCGVVVA PSASSSSTLT SMAGLSPAAA  300
DAAEQSANVA AAAATTTNLP WLDLGHANPI ATMDHYAGVL DELRWSDYFD GAYQAATTAT  360
QGGALQGQCL YDGGGGGGKD VDDAVQFVDV HSLSNWC

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G57560.1	3e-69	MYB family protein

Link Out ? help Back to Top
Ensembl	ONIVA04G28760.1