PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

ONIVA05G00200.1

Organism

Oryza sativa f. spontanea

Taxonomic ID

4536

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa

Family

bHLH

Protein Properties

Length: 476aa MW: 51637.3 Da PI: 7.3262

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
ONIVA05G00200.1	genome	EnsemblPlants	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	26.8	9.2e-09	327	374	4	55
HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 +h+ +Er RR++i +++ L++l+P + +k Ka +L + + Y++sLq ONIVA05G00200.1 327 SHSLAERVRREKISERMKMLQSLVPGC----DKVTGKALMLDEIISYVQSLQ 374 8***********************9....555***************9 PP

Sequence ? help Back to Top
Protein Sequence Length: 476 aa Download sequence
MAQQWRSLLF LLLLLLLVPF AAAAGQDAPF VVAQKKVALS RPGPGVERLA VTLNLYNQGS 60 ATAYDVSLND DSWPQEAFQL ISGTTSKIVE KLDPGATASH NFILETKVQG KFQGSPAIIT 120 YRVPTKAALQ EAYSTPMFPL DILAERPPQQ KFELRLVGKY GSLVSVVSFV EPLPVPGFPA 180 GCSNLEEKAA AAMAAYEYES SSCSSLDPTS MPMVYSPIVL QPQECPLSFV FDNAAAAAGD 240 NKWVPGIQGS CPCSLGSTQD MDASWGKSRK HKRSNVGLKG LEEKKARRVV LHQHDDDVKK 300 KAKEAAGGEP PAGYIHVRAR RGQATDSHSL AERVRREKIS ERMKMLQSLV PGCDKVTGKA 360 LMLDEIISYV QSLQNQVEFL SMKLASLSPL MYEFGPGIDM HPDVLRQLAK MPHEMVQCMG 420 QMGSTGISLQ GLGGGPTGFA QDGSSHMNMV VMQVGEQGQQ QGSLHQVEMS SHCFFH

Sequence ? help Back to Top

Protein Sequence Length: 476 aa Download sequence

MAQQWRSLLF LLLLLLLVPF AAAAGQDAPF VVAQKKVALS RPGPGVERLA VTLNLYNQGS  60
ATAYDVSLND DSWPQEAFQL ISGTTSKIVE KLDPGATASH NFILETKVQG KFQGSPAIIT  120
YRVPTKAALQ EAYSTPMFPL DILAERPPQQ KFELRLVGKY GSLVSVVSFV EPLPVPGFPA  180
GCSNLEEKAA AAMAAYEYES SSCSSLDPTS MPMVYSPIVL QPQECPLSFV FDNAAAAAGD  240
NKWVPGIQGS CPCSLGSTQD MDASWGKSRK HKRSNVGLKG LEEKKARRVV LHQHDDDVKK  300
KAKEAAGGEP PAGYIHVRAR RGQATDSHSL AERVRREKIS ERMKMLQSLV PGCDKVTGKA  360
LMLDEIISYV QSLQNQVEFL SMKLASLSPL MYEFGPGIDM HPDVLRQLAK MPHEMVQCMG  420
QMGSTGISLQ GLGGGPTGFA QDGSSHMNMV VMQVGEQGQQ QGSLHQVEMS SHCFFH

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	269	303	RKHKRSNVGLKGLEEKKARRVVLHQHDDDVKKKAK

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G50915.2	3e-47	bHLH family protein

Link Out ? help Back to Top
Ensembl	ONIVA05G00200.1