PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

ONIVA05G00420.1

Organism

Oryza sativa f. spontanea

Taxonomic ID

4536

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa

Family

C2H2

Protein Properties

Length: 403aa MW: 44768.8 Da PI: 8.3353

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
ONIVA05G00420.1	genome	EnsemblPlants	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	11	0.0013	91	113	3	23
ET..TTTEEESSHHHHHHHHHHT CS zf-C2H2 3 Cp..dCgksFsrksnLkrHirtH 23 C+ +Cgk+F + L++H +H ONIVA05G00420.1 91 CSyeNCGKTFVDVAALRKHAHVH 113 77779**************9887 PP
2	zf-C2H2	18.5	5.3e-06	118	142	1	23
EEET..TTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCp..dCgksFsrksnLkrHirtH 23 y C+ Cgk F ++s LkrH H ONIVA05G00420.1 118 YICQepGCGKKFVDSSKLKRHHLIH 142 889999***************9988 PP
3	zf-C2H2	18.9	4.2e-06	148	172	1	23
EEET..TTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCp..dCgksFsrksnLkrHirtH 23 + Cp Cgk Fs nL++H++tH ONIVA05G00420.1 148 FICPhpGCGKAFSLDFNLRSHLKTH 172 789*********************9 PP
4	zf-C2H2	16.5	2.3e-05	178	202	1	23
EEET..TTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCp..dCgksFsrksnLkrHirtH 23 ++Cp Cgk+F++ s Lk+H + H ONIVA05G00420.1 178 HVCPfpACGKRFTSDSKLKSHVKGH 202 789999***************9988 PP
5	zf-C2H2	18.3	6.2e-06	263	288	1	23
EEET..TTTEEESSHHHHHHHHHH.T CS zf-C2H2 1 ykCp..dCgksFsrksnLkrHirt.H 23 y+Cp Cgk + +++ L+ H++t H ONIVA05G00420.1 263 YVCPydGCGKAYIHSYKLNLHLKTqH 288 9**********************999 PP

Sequence ? help Back to Top
Protein Sequence Length: 403 aa Download sequence
MEYATPAGAG AGAGGYYYYP PSQQHKPRRP PRPAARWVKH WIPQDLATSS GKCALYKWVR 60 EDVYKNLKDG KAVPEPEAVK PEPTTEILFL CSYENCGKTF VDVAALRKHA HVHNERQYIC 120 QEPGCGKKFV DSSKLKRHHL IHTGQKDFIC PHPGCGKAFS LDFNLRSHLK THALENYHVC 180 PFPACGKRFT SDSKLKSHVK GHEKTGTPIT AQYVPSSDKP QSSSKPATPA TTKPTTPAAT 240 KTTTPASTKP TTPAPTSFAE RPYVCPYDGC GKAYIHSYKL NLHLKTQHPE HGQEENGRIA 300 AHASEHAVND RANQYNYAEI VDLAPNPKRS KTNSGHKTPS SNKAYNVKIS SVLPADISGV 360 KNQWPGKYED DSEETEEDQG NNIEDGWRYG NQNADDEETE YED

Sequence ? help Back to Top

Protein Sequence Length: 403 aa Download sequence

MEYATPAGAG AGAGGYYYYP PSQQHKPRRP PRPAARWVKH WIPQDLATSS GKCALYKWVR  60
EDVYKNLKDG KAVPEPEAVK PEPTTEILFL CSYENCGKTF VDVAALRKHA HVHNERQYIC  120
QEPGCGKKFV DSSKLKRHHL IHTGQKDFIC PHPGCGKAFS LDFNLRSHLK THALENYHVC  180
PFPACGKRFT SDSKLKSHVK GHEKTGTPIT AQYVPSSDKP QSSSKPATPA TTKPTTPAAT  240
KTTTPASTKP TTPAPTSFAE RPYVCPYDGC GKAYIHSYKL NLHLKTQHPE HGQEENGRIA  300
AHASEHAVND RANQYNYAEI VDLAPNPKRS KTNSGHKTPS SNKAYNVKIS SVLPADISGV  360
KNQWPGKYED DSEETEEDQG NNIEDGWRYG NQNADDEETE YED

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G06634.1	4e-91	C2H2 family protein

Link Out ? help Back to Top
Ensembl	ONIVA05G00420.1