PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

ONIVA05G01580.3

Organism

Oryza sativa f. spontanea

Taxonomic ID

4536

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa

Family

C2H2

Protein Properties

Length: 380aa MW: 43065.1 Da PI: 8.6163

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
ONIVA05G01580.3	genome	EnsemblPlants	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	20.4	1.4e-06	80	102	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 + C+ Cg sF+ + +L++H+++H ONIVA05G01580.3 80 HDCKVCGASFKKPAHLRQHMQSH 102 56*******************99 PP
2	zf-C2H2	19.7	2.3e-06	108	132	1	23
EEET..TTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCp..dCgksFsrksnLkrHirtH 23 ++C+ C+ s+srk++L+rH+ tH ONIVA05G01580.3 108 FSCHvdGCPFSYSRKDHLNRHLLTH 132 89*********************99 PP
3	zf-C2H2	11.3	0.0011	137	162	1	23
EEET..TTTEEESSHHHHHHHHHH.T CS zf-C2H2 1 ykCp..dCgksFsrksnLkrHirt.H 23 + Cp C++ F+ k n +rH + H ONIVA05G01580.3 137 FACPmeGCNRKFTIKGNIQRHVQEmH 162 78*******************98877 PP
4	zf-C2H2	20.8	1e-06	174	198	1	23
EEET..TTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCp..dCgksFsrksnLkrHirtH 23 + Cp +Cgk+F+ s L++H +H ONIVA05G01580.3 174 FICPeeNCGKTFKYASKLQKHEESH 198 78*******************9988 PP
5	zf-C2H2	16.9	1.8e-05	265	289	2	23
EET..TTTEEESSHHHHHHHHHH.T CS zf-C2H2 2 kCp..dCgksFsrksnLkrHirt.H 23 +C+ dC+ sFs ksnL +H + H ONIVA05G01580.3 265 RCHlkDCKLSFSKKSNLDKHVKAvH 289 7*******************99877 PP

Sequence ? help Back to Top
Protein Sequence Length: 380 aa Download sequence
MGSVELGAEE REVAGGEGGS KGAAPPARDI RRYKCDFCSV VRSKKGLIRA HVLEHHKDEV 60 DDLDDYLGRG GGETCKEMDH DCKVCGASFK KPAHLRQHMQ SHSLERPFSC HVDGCPFSYS 120 RKDHLNRHLL THQGKLFACP MEGCNRKFTI KGNIQRHVQE MHKDGSPCES KKEFICPEEN 180 CGKTFKYASK LQKHEESHVK LDYSEVICCE PGCMKAFTNL ECLKAHNKSC HRHVVCDVCG 240 TKQLKKNFKR HQRMHEGSCV TERVRCHLKD CKLSFSKKSN LDKHVKAVHE QKRPFVCGFS 300 GCGKSFSYKH VRDNHEKSSA HVYVQANFEE IDGERPRQAG GRKRKAIPVE SLMRKRVAAP 360 DDDAPACDDG TEYLRWLLSG

Sequence ? help Back to Top

Protein Sequence Length: 380 aa Download sequence

MGSVELGAEE REVAGGEGGS KGAAPPARDI RRYKCDFCSV VRSKKGLIRA HVLEHHKDEV  60
DDLDDYLGRG GGETCKEMDH DCKVCGASFK KPAHLRQHMQ SHSLERPFSC HVDGCPFSYS  120
RKDHLNRHLL THQGKLFACP MEGCNRKFTI KGNIQRHVQE MHKDGSPCES KKEFICPEEN  180
CGKTFKYASK LQKHEESHVK LDYSEVICCE PGCMKAFTNL ECLKAHNKSC HRHVVCDVCG  240
TKQLKKNFKR HQRMHEGSCV TERVRCHLKD CKLSFSKKSN LDKHVKAVHE QKRPFVCGFS  300
GCGKSFSYKH VRDNHEKSSA HVYVQANFEE IDGERPRQAG GRKRKAIPVE SLMRKRVAAP  360
DDDAPACDDG TEYLRWLLSG

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G72050.2	1e-115	C2H2 family protein

Link Out ? help Back to Top
Ensembl	ONIVA05G01580.3