PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID ONIVA05G01850.1
Organism
Oryza sativa f. spontanea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
Family LBD
Protein Properties Length: 204aa    MW: 21081.1 Da    PI: 6.7542
Description LBD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
ONIVA05G01850.1genomeEnsemblPlantsView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF26089.34.8e-28381251100
           DUF260   1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkael 94 
                      +CaaCk+lrr+C++ Cvlapyfp ++p+kf  +h+            +lpee+r da+ss+vyeA+ar+rdPvyG++g i +lq+q++ lka+l
  ONIVA05G01850.1  38 PCAACKILRRRCVDRCVLAPYFPPTEPHKFTTAHR------------ELPEEQRADAVSSMVYEANARIRDPVYGCAGAICQLQKQVNDLKAQL 119
                      7*******************************997............99********************************************* PP

           DUF260  95 allkee 100
                      a++++e
  ONIVA05G01850.1 120 ARAHAE 125
                      **9987 PP
Sequence ? help Back to Top
Protein Sequence    Length: 204 aa     Download sequence    
MGSSSDTACT VATAPPSPTP TSPPPQLAAT TTTVVLSPCA ACKILRRRCV DRCVLAPYFP  60
PTEPHKFTTA HRELPEEQRA DAVSSMVYEA NARIRDPVYG CAGAICQLQK QVNDLKAQLA  120
RAHAELAGAR AQHAHLVALL CMEMAAAAPP QHPTTTAAAA AYCAAVGGAA SPAAPVDALY  180
VVDGAGAAAM QASPIGWVDE PLWT
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G07900.12e-39LBD family protein