PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID ONIVA05G02220.1
Organism
Oryza sativa f. spontanea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
Family MYB
Protein Properties Length: 311aa    MW: 34017.1 Da    PI: 5.9504
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
ONIVA05G02220.1genomeEnsemblPlantsView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding61.22.2e-193077148
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                     rg+WT eEd llvd+++ +G g+W++ ar+ g++Rt+k+c++rw++yl
  ONIVA05G02220.1 30 RGPWTVEEDMLLVDYIANHGEGRWNSLARCAGLRRTGKSCRLRWLNYL 77
                     89********************************************97 PP
2Myb_DNA-binding51.13.2e-1683126146
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                      rg+ T++E++l++d++ ++G++ W++Ia++++ gRt++++k++w++
  ONIVA05G02220.1  83 RGNITADEQLLILDLHSRWGNR-WSKIAQYLP-GRTDNEIKNYWRT 126
                      7999******************.*********.***********96 PP
Sequence ? help Back to Top
Protein Sequence    Length: 311 aa     Download sequence    
MEMMRMAMSP AMSSATAAAA ASEDEGDLRR GPWTVEEDML LVDYIANHGE GRWNSLARCA  60
GLRRTGKSCR LRWLNYLRPD VRRGNITADE QLLILDLHSR WGNRWSKIAQ YLPGRTDNEI  120
KNYWRTRVQK HAKQLRCDVN SKEFRDVVRH VWMPRLVERI QADAAAAGEV AAPAPVSAAA  180
TRSMSSPAGA MYLHHQQIPL AAGAMVVAPA VSSEAYHHHG CGGGGDTSCS EPSQAAVTMS  240
PDDASSTLRS SSAAAENDTI HGDVLSGSWS ELLATTTTTI AATAGLPDFD ELGDFEDNLW  300
SLEDIWLHQQ C
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G49620.12e-80MYB family protein