PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

ONIVA05G02540.1

Organism

Oryza sativa f. spontanea

Taxonomic ID

4536

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa

Family

bHLH

Protein Properties

Length: 507aa MW: 53257.6 Da PI: 6.1626

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
ONIVA05G02540.1	genome	EnsemblPlants	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	51.1	2.4e-16	341	387	4	55
HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 hn ErrRRdriN+++ L+el+P++ K +Ka++Le+A+eY+k Lq ONIVA05G02540.1 341 VHNLSERRRRDRINEKMRALQELIPNC-----NKIDKASMLEEAIEYLKTLQ 387 5***********************8.....6****************9 PP

Sequence ? help Back to Top
Protein Sequence Length: 507 aa Download sequence
MLRGNDTGSD LAELLWDNGA PAPLRPPPPP PFQPFTCSAA ATTSPPAHDY LFIKNLMRGG 60 GAANHHHHDD DDDDDDDDVP WLHYHPVVDD DDDADADTAP LPPDYCAALL SGLSDHLPPP 120 AAAASRVDPD PCSSSHGAVV PSTSAAAAKQ ARTSGGGGGG VMNFTFFSRP LQQRPSGGET 180 ASASASAAAT STVPVESTVV QAATNRLRST PLFSDQRMAW LHPPKPSPRA AAPPPPPPPL 240 APTTRHRLDT ATATATVAQR LPPSEAKAPD APPPAATATA TTSSVCSGNG DRRQLNWRDS 300 HNNQSAEWSA SQDELDLDDE LAGVHRRSAA RSSKRSRTAE VHNLSERRRR DRINEKMRAL 360 QELIPNCNKI DKASMLEEAI EYLKTLQLQV QMMSMGTGMF VPPMMLPAAA AAMQHHHMQM 420 QQMAGPMAAA AHFPHLGAAA AMGLAGFGMP AAAQFPCPMF PAAPPMSMFA PPPPPPPFPH 480 AAATAIEQTP SPPGAADAGN APAVKQA

Sequence ? help Back to Top

Protein Sequence Length: 507 aa Download sequence

MLRGNDTGSD LAELLWDNGA PAPLRPPPPP PFQPFTCSAA ATTSPPAHDY LFIKNLMRGG  60
GAANHHHHDD DDDDDDDDVP WLHYHPVVDD DDDADADTAP LPPDYCAALL SGLSDHLPPP  120
AAAASRVDPD PCSSSHGAVV PSTSAAAAKQ ARTSGGGGGG VMNFTFFSRP LQQRPSGGET  180
ASASASAAAT STVPVESTVV QAATNRLRST PLFSDQRMAW LHPPKPSPRA AAPPPPPPPL  240
APTTRHRLDT ATATATVAQR LPPSEAKAPD APPPAATATA TTSSVCSGNG DRRQLNWRDS  300
HNNQSAEWSA SQDELDLDDE LAGVHRRSAA RSSKRSRTAE VHNLSERRRR DRINEKMRAL  360
QELIPNCNKI DKASMLEEAI EYLKTLQLQV QMMSMGTGMF VPPMMLPAAA AAMQHHHMQM  420
QQMAGPMAAA AHFPHLGAAA AMGLAGFGMP AAAQFPCPMF PAAPPMSMFA PPPPPPPFPH  480
AAATAIEQTP SPPGAADAGN APAVKQA

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	346	351	ERRRRD

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G09530.2	1e-30	bHLH family protein

Link Out ? help Back to Top
Ensembl	ONIVA05G02540.1