PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID ONIVA05G04920.1
Organism
Oryza sativa f. spontanea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
Family LBD
Protein Properties Length: 208aa    MW: 21698.8 Da    PI: 8.8075
Description LBD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
ONIVA05G04920.1genomeEnsemblPlantsView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF260129.12e-40281271100
           DUF260   1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkael 94 
                      +CaaCk+lrr+Ca++C+++pyf   +p+kfa vhk+FGasnv+k+l +++e++r da++slvyeA+ r+rdPvyG++g il+lqqq++ l+ael
  ONIVA05G04920.1  28 PCAACKLLRRRCAQECPFSPYFSPLEPHKFASVHKVFGASNVSKMLLEVHESQRGDAANSLVYEANLRLRDPVYGCMGAILTLQQQVQALEAEL 121
                      7********************************************************************************************* PP

           DUF260  95 allkee 100
                      a++++ 
  ONIVA05G04920.1 122 AAVRAD 127
                      *99875 PP
Sequence ? help Back to Top
Protein Sequence    Length: 208 aa     Download sequence    
MMARRSCSMP AAGAGPGSAA AAVNTITPCA ACKLLRRRCA QECPFSPYFS PLEPHKFASV  60
HKVFGASNVS KMLLEVHESQ RGDAANSLVY EANLRLRDPV YGCMGAILTL QQQVQALEAE  120
LAAVRADIVR HKYRLPSAAA VLPSSHASHL LAAAAAARQL PVAGTMGVVT TATLPASASS  180
SSTTAVYAAA SSSTDYSSIT NENVPYFS
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G30340.12e-58LBD family protein