PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

ONIVA05G07370.6

Organism

Oryza sativa f. spontanea

Taxonomic ID

4536

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa

Family

MIKC_MADS

Protein Properties

Length: 175aa MW: 19441.8 Da PI: 5.1299

Description

MIKC_MADS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
ONIVA05G07370.6	genome	EnsemblPlants	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	SRF-TF	99.5	1.3e-31	51	101	1	51
S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS SRF-TF 1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51 krien++nrqvtf+kRrng+lKKA+ELSvLCdaeva+++fss+g+lyeys+ ONIVA05G07370.6 51 KRIENTTNRQVTFCKRRNGLLKKAYELSVLCDAEVALVVFSSRGRLYEYSN 101 79***********************************************95 PP
2	K-box	17.1	2.3e-07	129	159	68	98
K-box 68 kKnellleqieelqkkekelqeenkaLrkkl 98 +ne+++++ie++q++e elq++n++ ++++ ONIVA05G07370.6 129 AQNEYMCAEIEYMQRRETELQNDNMYSKSEM 159 589*********************9988776 PP

Sequence ? help Back to Top
Protein Sequence Length: 175 aa Download sequence
MHIYKEQEAE PSTGLMMPEP APVASPGSGG SGGSGSVGAE KIGSRGKIEI KRIENTTNRQ 60 VTFCKRRNGL LKKAYELSVL CDAEVALVVF SSRGRLYEYS NNSVEETIER YKKANSDTSN 120 ASTVAEINAQ NEYMCAEIEY MQRRETELQN DNMYSKSEMK DKYGSVSCMC FLQGE

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G42830.1	2e-52	MIKC_MADS family protein

Link Out ? help Back to Top
Ensembl	ONIVA05G07370.6