PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID ONIVA05G11160.1
Organism
Oryza sativa f. spontanea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
Family M-type_MADS
Protein Properties Length: 218aa    MW: 24103.5 Da    PI: 8.8109
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
ONIVA05G11160.1genomeEnsemblPlantsView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF51.99.5e-171660145
                     S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSE CS
           SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgk 45
                     krie k  r v fskRr++++ KA ELS LC+a++a +++s+ g+
  ONIVA05G11160.1 16 KRIEKKDARDVCFSKRRQTLFNKAGELSLLCNANIAAVVISPAGR 60
                     79****************************************997 PP
Sequence ? help Back to Top
Protein Sequence    Length: 218 aa     Download sequence    
MVKGKGRAGR KKVEIKRIEK KDARDVCFSK RRQTLFNKAG ELSLLCNANI AAVVISPAGR  60
GFSFALPSVD DVADRLASMA MGIPNNHSLG GGYHDSGEVT NIAQQQKIEY VELQKSLEKS  120
EKKKRVQEAM EKERAGHLMQ SLTSEVNLLG QDELEEMHNK LSALPYTSIA KFYQVLQDAK  180
GTRMPLPQPH IEIACQSQFL FEEQAVTPAN ADFPGSNT
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G34440.18e-15M-type_MADS family protein