PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID ONIVA05G11880.1
Organism
Oryza sativa f. spontanea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
Family FAR1
Protein Properties Length: 220aa    MW: 25035.9 Da    PI: 5.6681
Description FAR1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
ONIVA05G11880.1genomeEnsemblPlantsView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1FAR168.91.3e-2186173188
             FAR1   1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkk.tekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHe 88 
                      ++Y++YA++ GF +++s+ ++s+ +++  +++f C  e +++e+  +  +++rr++ + +tgCka+++v k+ d+kw+vt ++l+HnH+
  ONIVA05G11880.1  86 NYYDDYARKWGFITKISSCRRSQITKQYNRYEFACHSERSSRESGASaGSRSRRSSRVLKTGCKARMVVVKR-DEKWVVTIVDLDHNHP 173
                      69************************************999998877567888899999***********99.9**************7 PP
Sequence ? help Back to Top
Protein Sequence    Length: 220 aa     Download sequence    
MEDNDDRASA EITTDQENHL KDALIQVFAA TSEHQEGEGE GAEVVQDEEI GEGVEGVRDE  60
EIGDINSKPD KPYVGMEFRD KDEAKNYYDD YARKWGFITK ISSCRRSQIT KQYNRYEFAC  120
HSERSSRESG ASAGSRSRRS SRVLKTGCKA RMVVVKRDEK WVVTIVDLDH NHPPLNPSAL  180
MSLKPHRLIK DEDHDLLEFL RTNKIPTQRI IKCPAGVNVL
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G07500.11e-13FAR1 family protein