PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

ONIVA05G13470.1

Organism

Oryza sativa f. spontanea

Taxonomic ID

4536

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa

Family

MYB

Protein Properties

Length: 303aa MW: 31496.1 Da PI: 7.1317

Description

MYB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
ONIVA05G13470.1	genome	EnsemblPlants	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	61	2.5e-19	20	65	1	47
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 +g+W++eEde+l av+++G+++W++I+++++ gR++k+c++rw + ONIVA05G13470.1 20 KGSWSPEEDEQLRGAVARHGPRNWTAISEEVP-GRSGKSCRLRWCNQ 65 799***************************.*********985 PP
2	Myb_DNA-binding	57.2	3.9e-18	72	115	1	46
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 r ++T++Ed l+v a++++G++ W+tIar + gRt++++k++w++ ONIVA05G13470.1 72 RRPFTPDEDALIVAAHAKYGNK-WATIARLLD-GRTDNSVKNHWNS 115 679*****************.*****.*********96 PP

Sequence ? help Back to Top
Protein Sequence Length: 303 aa Download sequence
MLIHGEGSSS SAAAAGGKIK GSWSPEEDEQ LRGAVARHGP RNWTAISEEV PGRSGKSCRL 60 RWCNQLSPGV HRRPFTPDED ALIVAAHAKY GNKWATIARL LDGRTDNSVK NHWNSSLRRN 120 RRAAAAAAAA AASVSYQSMD LTEEADNDDE GTSDDSVAIP AQSSPAAVVA GVPVLPPPPP 180 PAKRLCVAPP TGVEHRAPPP DPPTSLSLSP PGAAAAAISA STVVGGSSAA RAEEEAVARE 240 KARMEQDPWL MAMMRQMITE EVQRQVSVVY SLVASSAAVA AQTGNAGGVG RKGPDGRPSN 300 GQD

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G67300.1	3e-52	MYB family protein

Link Out ? help Back to Top
Ensembl	ONIVA05G13470.1