PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

ONIVA05G17300.1

Organism

Oryza sativa f. spontanea

Taxonomic ID

4536

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa

Family

LBD

Protein Properties

Length: 314aa MW: 31558.3 Da PI: 8.209

Description

LBD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
ONIVA05G17300.1	genome	EnsemblPlants	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF260	139.7	9.9e-44	74	172	1	99
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkael 94 +CaaCk+lrrkC++dCv+apyfp ++p+kf vh++FGasnv+kll++l++ +reda++sl+yeA++r+rdPvyG+vgvi+ lq+ql+ql+++l ONIVA05G17300.1 74 PCAACKFLRRKCQPDCVFAPYFPPDNPQKFVHVHRVFGASNVTKLLNELHPYQREDAVNSLAYEADMRLRDPVYGCVGVISVLQHQLRQLQQDL 167 7********************************************************************************************* PP DUF260 95 allke 99 ++++ ONIVA05G17300.1 168 SRARF 172 99875 PP

Sequence ? help Back to Top
Protein Sequence Length: 314 aa Download sequence
MAASSSASSL PLSSGSVITV SSSPAVGASS GGGGGGTGSP CAACKFLRRK CQPDCREDAV 60 TAAANTAACG TGSPCAACKF LRRKCQPDCV FAPYFPPDNP QKFVHVHRVF GASNVTKLLN 120 ELHPYQREDA VNSLAYEADM RLRDPVYGCV GVISVLQHQL RQLQQDLSRA RFELSKYQAA 180 VAVSSSNGQA AAAAAMTDHF IGSAVQPNCT QNFISGGGVA AAAIGVGGGA GGGFVNDHHQ 240 FSAVQMLARS YDGESAVARL GGAVNVSGGG GYEFGYSSAM GGAGGPMSGL GPLGGGTFLK 300 PGTAGGGDRP TAAQ

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G65620.3	2e-54	LBD family protein

Link Out ? help Back to Top
Ensembl	ONIVA05G17300.1