PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

ONIVA05G18090.1

Organism

Oryza sativa f. spontanea

Taxonomic ID

4536

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa

Family

HD-ZIP

Protein Properties

Length: 237aa MW: 25593.7 Da PI: 9.5513

Description

HD-ZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
ONIVA05G18090.1	genome	EnsemblPlants	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	61.1	1.7e-19	105	159	2	56
T--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS Homeobox 2 rkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 rk+ ++t eq + Le+ F+ ++ +s++e++eLA klgL+ rqV vWFqNrRa+ k ONIVA05G18090.1 105 RKKLRLTGEQATLLEDSFRAHNILSHAEKQELAGKLGLSARQVEVWFQNRRARTK 159 788899***********************************************98 PP
2	HD-ZIP_I/II	114.8	5.3e-37	105	193	1	89
HD-ZIP_I/II 1 ekkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLre 89 +kk+rl+ eq++lLE+sF++++ L++ +K+ela +Lgl++rqv+vWFqnrRARtk+kq+E d++ L+r++d+l+++n+rL+++ +eLr+ ONIVA05G18090.1 105 RKKLRLTGEQATLLEDSFRAHNILSHAEKQELAGKLGLSARQVEVWFQNRRARTKLKQTEADCDLLRRWCDHLAADNARLRRDLAELRR 193 69*************************************************************************************95 PP

Sequence ? help Back to Top
Protein Sequence Length: 237 aa Download sequence
MDSVVDGGLD TRLSLAVGCC PPRRRPVLLF GEVLPSPEKK VAAAAVVAAG KRGREQRGEA 60 EAEATTTRQR RSCKKGRRGR GDDDDDDGDR RSPSGGGGDE EGASRKKLRL TGEQATLLED 120 SFRAHNILSH AEKQELAGKL GLSARQVEVW FQNRRARTKL KQTEADCDLL RRWCDHLAAD 180 NARLRRDLAE LRRSSSSPPV SGLAVATPVV CPSCAHDDKR RLAFATAAAA AGDMASN

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	104	110	SRKKLRL
2	154	162	RRARTKLKQ

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G16780.1	2e-27	HD-ZIP family protein

Link Out ? help Back to Top
Ensembl	ONIVA05G18090.1