PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID ONIVA05G19800.1
Organism
Oryza sativa f. spontanea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
Family bHLH
Protein Properties Length: 224aa    MW: 24386.6 Da    PI: 8.2186
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
ONIVA05G19800.1genomeEnsemblPlantsView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH17.48.2e-0650103454
                      HHHHHHHHHHHHHHHH......HHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
              HLH   4 ahnerErrRRdriNsa......feeLrellPkaskapskKlsKaeiLekAveYIksL 54 
                      ++  rE+ RRdr+N++      f+eL  +l +    + ++ +K++iL  A + +++L
  ONIVA05G19800.1  50 TKACREKLRRDRLNERhvshfqFNELSAILEPG---KPPRADKVSILSDAARLLSQL 103
                      5678***********77777779*********9...89***************9999 PP
Sequence ? help Back to Top
Protein Sequence    Length: 224 aa     Download sequence    
MSCGGAGQSG WLLEYGLVEE EIQGSDFIYM VDDPAAVSRS RPESSAPPGT KACREKLRRD  60
RLNERHVSHF QFNELSAILE PGKPPRADKV SILSDAARLL SQLRAEAQKL KSSNESLQDS  120
IKSLKAEKSE LRDEKTRLKA ERERLEQMLK GVGAATPAAP APFVPHHAAA VAAAPAYHPA  180
AFAQAGGKYV PYATNYAPPA AFWQWIPPTS LDTSKDPVMW PPVA
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G54680.14e-50bHLH family protein