PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID ONIVA05G20380.1
Organism
Oryza sativa f. spontanea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
Family NF-YB
Protein Properties Length: 84aa    MW: 8158.02 Da    PI: 7.3637
Description NF-YB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
ONIVA05G20380.1genomeEnsemblPlantsView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NF-YB87.51.5e-273684149
            NF-YB  1 vreqdrflPianvsrimkkvlPanakiskdaketvqecvsefisfvtse 49
                     vreqdrflPian+srimkk++Pan+ki+kdaketvqecvsefisf+tse
  ONIVA05G20380.1 36 VREQDRFLPIANISRIMKKAIPANGKIAKDAKETVQECVSEFISFITSE 84
                     69*********************************************98 PP
Sequence ? help Back to Top
Protein Sequence    Length: 84 aa     Download sequence    
MADGPGSPGG GGGSHESGSP RGGGGGGGGG GGGGGVREQD RFLPIANISR IMKKAIPANG  60
KIAKDAKETV QECVSEFISF ITSE
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G38880.71e-28NF-YB family protein