PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID ONIVA05G23460.1
Organism
Oryza sativa f. spontanea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
Family TCP
Protein Properties Length: 315aa    MW: 32729.2 Da    PI: 7.4834
Description TCP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
ONIVA05G23460.1genomeEnsemblPlantsView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1TCP97.32.8e-3075177389
              TCP   3 gkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgtssssaseceaesssssasnsssg........ 88 
                      g+kdrhsk+ T +g+RdRRvRls+++a++++dLqd+LG+ ++sk ++WL+++a+++i++l+ ++++++    +++ + +a++s ++        
  ONIVA05G23460.1  75 GGKDRHSKVRTVKGLRDRRVRLSVPTAIQLYDLQDRLGLSQPSKVVDWLINAAQAEIDKLPPLQFPPH----DHDLVAAAASSMAPppfanggd 164
                      78*************************************************************99999....2222222221111122223334 PP

              TCP  89 ............k 89 
                                  +
  ONIVA05G23460.1 165 ghhgasassmleD 177
                      4443333333330 PP
Sequence ? help Back to Top
Protein Sequence    Length: 315 aa     Download sequence    
MACMAGVDNR GGEALSPAAV ASGRGRSNHE QLKMISNNST NEELGGGGAA AAVASSRHWS  60
ASTESRIVRV SRVFGGKDRH SKVRTVKGLR DRRVRLSVPT AIQLYDLQDR LGLSQPSKVV  120
DWLINAAQAE IDKLPPLQFP PHDHDLVAAA ASSMAPPPFA NGGDGHHGAS ASSMLEDGDK  180
AAGGGGMKAF MSLSNSLGLL NAATMPATLA AHHHHHHHAA AYYAAAESWG NGGNGGHHHD  240
VSHGVSPSAH NSPFPSLLSL APGSHHQFVF YSPEGGGFAV KEAAAEQFPV DSLDHSQGQL  300
TLSSARSFLH SGSQG
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G60970.11e-40TCP family protein