PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID ONIVA05G26000.1
Organism
Oryza sativa f. spontanea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
Family RAV
Protein Properties Length: 394aa    MW: 41376.9 Da    PI: 10.055
Description RAV family protein
Gene Model
Gene Model ID Type Source Coding Sequence
ONIVA05G26000.1genomeEnsemblPlantsView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP239.51.4e-1267115155
              AP2   1 sgykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55 
                      s+ykGV   + +grW A+I++      r +r++lg+f  + eAa+a++ a+++++g
  ONIVA05G26000.1  67 SKYKGVVPQP-NGRWGAQIYE------RhQRVWLGTFTGEAEAARAYDVAAQRFRG 115
                      89****9888.8*********......44**********99*************98 PP
2B393.31.7e-29193306192
                      EEEE-..-HHHHTT-EE--HHH.HTT......................---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHH CS
               B3   1 ffkvltpsdvlksgrlvlpkkfaeeh......................ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkan 72 
                      f+k+ tpsdv+k++rlv+pk++ae+h                      gg + +++ l +ed  g++W+++++y+++s++yvltkGW++Fvk++
  ONIVA05G26000.1 193 FDKTVTPSDVGKLNRLVIPKQHAEKHfplqlppptttssvaaaadaaaGGGECKGVLLNFEDAAGKVWKFRYSYWNSSQSYVLTKGWSRFVKDK 286
                      89***************************99999999888888888885566699*************************************** PP

                      T--TT-EEEEEE-SSSEE.. CS
               B3  73 gLkegDfvvFkldgrsefel 92 
                      gL +gD v F++   ++++l
  ONIVA05G26000.1 287 GLHAGDAVGFYRAAGKNAQL 306
                      ***********765555555 PP
Sequence ? help Back to Top
Protein Sequence    Length: 394 aa     Download sequence    
MDSTSCLLDD ASSGASTGKK AAAAAASKAL QRVGSGASAV MDAAEPGAEA DSGGERRGGG  60
GGKLPSSKYK GVVPQPNGRW GAQIYERHQR VWLGTFTGEA EAARAYDVAA QRFRGRDAVT  120
NFRPLAESDP EAAVELRFLA SRSKAEVVDM LRKHTYLEEL TQNKRAFAAI SPPPPKHPAS  180
SPPSSSAARE HLFDKTVTPS DVGKLNRLVI PKQHAEKHFP LQLPPPTTTS SVAAAADAAA  240
GGGECKGVLL NFEDAAGKVW KFRYSYWNSS QSYVLTKGWS RFVKDKGLHA GDAVGFYRAA  300
GKNAQLFIDC KVRAKPTTAA AAAAFLSAVA AAAAPPPAVK AIRLFGVDLL TAAAPELQDA  360
GGAAMTKSKR AMDAMAESQA HVVFKKQCIE LALT
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G25560.16e-95RAV family protein