PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID ONIVA05G27760.1
Organism
Oryza sativa f. spontanea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
Family C3H
Protein Properties Length: 148aa    MW: 16693.9 Da    PI: 4.8167
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
ONIVA05G27760.1genomeEnsemblPlantsView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH31.14e-101438226
                     -S---SGGGGTS--TTTTT-SS-SS CS
          zf-CCCH  2 ktelCrffartGtCkyGdrCkFaHg 26
                     ++++C+f+++ G C++GdrC++ H 
  ONIVA05G27760.1 14 DRVNCPFYFKIGACRHGDRCSRLHN 38
                     6899********************7 PP
Sequence ? help Back to Top
Protein Sequence    Length: 148 aa     Download sequence    
MAEHLASIFG TEKDRVNCPF YFKIGACRHG DRCSRLHNRP TVSPTIVLAN MYQRPDMITP  60
GVDAQGQPID PEKMQEHFED FYEDIYEELS KFGEVETLNV CDNLADHMIG NVYVQFREEE  120
QAVAAHNALQ GSLRRTAATV GATVILCM
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G44785.14e-30C3H family protein