PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

ONIVA05G28880.1

Organism

Oryza sativa f. spontanea

Taxonomic ID

4536

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa

Family

HD-ZIP

Protein Properties

Length: 223aa MW: 25160.3 Da PI: 10.2501

Description

HD-ZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
ONIVA05G28880.1	genome	EnsemblPlants	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	41	3.2e-13	86	137	6	57
S--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHHC CS Homeobox 6 tftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakekk 57 ++++ q ++L e+++ n+ ++ ++++eLA++l+L +qV WF NrR + k+ ONIVA05G28880.1 86 RLSRVQSKQLDEFYRVNHAVDSKQKKELADRLNLRISQVDAWFRNRRLRSKQ 137 67899********************************************996 PP
2	HD-ZIP_I/II	69.2	8.8e-23	83	169	2	89
HD-ZIP_I/II 2 kkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLre 89 ++rrls+ q+k+L+e ++ ++ +++++K+ela +L+l+ qv+ WF nrR R k+k +E+++++Lk+++++lk en+rL+ +ve+Lr+ ONIVA05G28880.1 83 NHRRLSRVQSKQLDEFYRVNHAVDSKQKKELADRLNLRISQVDAWFRNRRLRSKQKSTEMECAYLKECFNKLK-ENHRLQLQVEQLRS 169 579********************************************************************97.56789999999986 PP

Sequence ? help Back to Top
Protein Sequence Length: 223 aa Download sequence
MEPMGILKCP SSLKLSVAVP GHALNPFSDG GSGSGCNNNN TRELGIHLDL DRPYAREELP 60 QQGGSMEVQK GEERGSVRHN SSNHRRLSRV QSKQLDEFYR VNHAVDSKQK KELADRLNLR 120 ISQVDAWFRN RRLRSKQKST EMECAYLKEC FNKLKENHRL QLQVEQLRST SLQLQLQLQL 180 HSERVATAPT GQQAGTSAAA RIFTLPLSGY NPSRGTWFSP NAH

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G01430.1	8e-22	HD-ZIP family protein

Link Out ? help Back to Top
Ensembl	ONIVA05G28880.1