PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

ONIVA05G29400.1

Organism

Oryza sativa f. spontanea

Taxonomic ID

4536

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa

Family

MYB

Protein Properties

Length: 410aa MW: 43820.5 Da PI: 6.8241

Description

MYB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
ONIVA05G29400.1	genome	EnsemblPlants	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	47.6	3.8e-15	36	83	1	48
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +g W++eEde+lv + + G g+W+ +ar g+ R++k+c++rw +yl ONIVA05G29400.1 36 KGLWSPEEDEKLVAYMLRSGQGSWSDVARNAGLQRCGKSCRLRWINYL 83 678*******************************************97 PP
2	Myb_DNA-binding	51.5	2.3e-16	89	132	1	46
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 rg+++++E++l+v++++ lG++ W+ Ia++++ gRt++++k++w++ ONIVA05G29400.1 89 RGAFSPQEEDLIVNLHAILGNR-WSQIAARLP-GRTDNEIKNFWNS 132 89******************.*****.*********97 PP

Sequence ? help Back to Top
Protein Sequence Length: 410 aa Download sequence
MRKPDCGGGG GAAKGGGVLG VAGGNNAAVV GGKVRKGLWS PEEDEKLVAY MLRSGQGSWS 60 DVARNAGLQR CGKSCRLRWI NYLRPDLKRG AFSPQEEDLI VNLHAILGNR WSQIAARLPG 120 RTDNEIKNFW NSTIKKRLKI SSSSASPATT TDCASPPEHK LGAVVDLAGG GGATDDVVVG 180 TANAAMKSMW VDSSSSSSSS SSSMQSRPSI MAAAAAGRSY GGLLPLPDQV CGVDTSPPPP 240 FFHDHSISIK QAYYGSTGAH HHHHAIAAMD GSSLIGDHHH HSSSILFGGA SVPPLLDHQT 300 ILDDDDDHPN KTGSNTTAAT LSSNITDNSN SNKNNSDNNN NISSSCCISL MNSSSNMIYW 360 EGHHQQQQQQ QHQMLQQQQQ HMSRNVMGEW DLEELMKDVS SLPFLDFQVE

Sequence ? help Back to Top

Protein Sequence Length: 410 aa Download sequence

MRKPDCGGGG GAAKGGGVLG VAGGNNAAVV GGKVRKGLWS PEEDEKLVAY MLRSGQGSWS  60
DVARNAGLQR CGKSCRLRWI NYLRPDLKRG AFSPQEEDLI VNLHAILGNR WSQIAARLPG  120
RTDNEIKNFW NSTIKKRLKI SSSSASPATT TDCASPPEHK LGAVVDLAGG GGATDDVVVG  180
TANAAMKSMW VDSSSSSSSS SSSMQSRPSI MAAAAAGRSY GGLLPLPDQV CGVDTSPPPP  240
FFHDHSISIK QAYYGSTGAH HHHHAIAAMD GSSLIGDHHH HSSSILFGGA SVPPLLDHQT  300
ILDDDDDHPN KTGSNTTAAT LSSNITDNSN SNKNNSDNNN NISSSCCISL MNSSSNMIYW  360
EGHHQQQQQQ QHQMLQQQQQ HMSRNVMGEW DLEELMKDVS SLPFLDFQVE

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G12870.1	4e-64	MYB family protein

Link Out ? help Back to Top
Ensembl	ONIVA05G29400.1