PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID ONIVA05G30250.1
Organism
Oryza sativa f. spontanea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
Family bHLH
Protein Properties Length: 227aa    MW: 24541.1 Da    PI: 8.3719
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
ONIVA05G30250.1genomeEnsemblPlantsView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH38.71.8e-12250455
                     HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
              HLH  4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55
                     +h ++Er+RR+++N+ +  Lr+l P     + k+ + a+i   A+++Ik+Lq
  ONIVA05G30250.1  2 SHIAVERNRRRQMNDHLKVLRSLTPAF---YIKRGDQASIIGGAIDFIKELQ 50
                     89************************9...9********************9 PP
Sequence ? help Back to Top
Protein Sequence    Length: 227 aa     Download sequence    
MSHIAVERNR RRQMNDHLKV LRSLTPAFYI KRGDQASIIG GAIDFIKELQ TLLQSLEAQK  60
KRRQQPQAHL ISPASISASG GGSPSPTPSP RSLITSCSPT AAAGSSAGSS SSISPKDENK  120
QQLQLVAELA ACCNSPMADV EARISGANVL LRTLSRRAPP VRIIALLESL HLEVLHLNIT  180
TMDDTVLYSF VLKIGLDCHL SVDDLAMEVH QSFMPPPAAH PDHHLHS
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G06120.16e-60bHLH family protein