PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

ONIVA05G30260.1

Organism

Oryza sativa f. spontanea

Taxonomic ID

4536

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa

Family

C2H2

Protein Properties

Length: 229aa MW: 24932.8 Da PI: 4.4434

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
ONIVA05G30260.1	genome	EnsemblPlants	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	16.5	2.4e-05	204	226	2	23
EETTTTEEESSHHHHHHHHHH.T CS zf-C2H2 2 kCpdCgksFsrksnLkrHirt.H 23 +C+ C+k+F++ + L++H + H ONIVA05G30260.1 204 SCKSCSKTFNSEMALQSHSKAkH 226 7*****************98777 PP

Sequence ? help Back to Top
Protein Sequence Length: 229 aa Download sequence
MYVKTDDQKL VIGTLSADKF PQIQFDLVFD KEFELSHTSK TANEEEEEKI IPAPRANGKV 60 EGKENEQKKQ GKTDSSASKS KAAVNDDDDD DDSDEDDSED EDLSPEDDDD DSSEDDSSED 120 DEDESDEEET PKKPETGKRK VAEIVLKTPS SDKKAKIATP SGQKTGDKKG VHVATPHPAK 180 QASKTPVNDK SKEKSPKSGG GSISCKSCSK TFNSEMALQS HSKAKHPAK

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G44750.2	2e-11	C2H2 family protein

Link Out ? help Back to Top
Ensembl	ONIVA05G30260.1