PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

ONIVA06G00010.3

Organism

Oryza sativa f. spontanea

Taxonomic ID

4536

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa

Family

LSD

Protein Properties

Length: 217aa MW: 24087.4 Da PI: 8.1257

Description

LSD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
ONIVA06G00010.3	genome	EnsemblPlants	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-LSD1	25.2	2.7e-08	26	46	1	21
zf-LSD1 1 CggCrtlLsYPrGApsVRCal 21 C+gC +lL+YP+GA sV+C++ ONIVA06G00010.3 26 CSGCCNLLMYPAGAMSVCCTV 46 *******************85 PP

Sequence ? help Back to Top
Protein Sequence Length: 217 aa Download sequence
MPVPLALYPT PVPFAPPNGA QSQLVCSGCC NLLMYPAGAM SVCCTVRSTV TAVPAPDMHI 60 IHSGIRNSTR VAMIVPAVRP LAKYTLELCV STPPPVAAAA MECVLDEYAT KHRISIDRFL 120 QLRIFVKVHD RFNASRIFLY MYSCSMKMLS FGVPCKEKAE YECNRLPAMI DAHLFRDYHL 180 AFWFGLFCAW GQPQDGDLHL WLPHQCRCHL GGASGLP

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G32540.3	6e-12	LSD family protein

Link Out ? help Back to Top
Ensembl	ONIVA06G00010.3