PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

ONIVA06G03230.1

Organism

Oryza sativa f. spontanea

Taxonomic ID

4536

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa

Family

HD-ZIP

Protein Properties

Length: 257aa MW: 27091.8 Da PI: 9.0308

Description

HD-ZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
ONIVA06G03230.1	genome	EnsemblPlants	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	61.8	1.1e-19	94	148	2	56
T--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS Homeobox 2 rkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 rk+ +++k+q +Lee+F+ +++++ +++ LAk+l+L rqV vWFqNrRa+ k ONIVA06G03230.1 94 RKKLRLSKDQAAVLEECFKTHHTLTPKQKVALAKSLNLRPRQVEVWFQNRRARTK 148 788899***********************************************98 PP
2	HD-ZIP_I/II	125.2	3e-40	94	184	1	92
HD-ZIP_I/II 1 ekkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLreelk 92 +kk+rlsk+q+++LEe+F+++++L+p++Kv+la++L+l+prqv+vWFqnrRARtk+kq+E+d+e+Lkr++d+l+++n+rL+ke +eLr +lk ONIVA06G03230.1 94 RKKLRLSKDQAAVLEECFKTHHTLTPKQKVALAKSLNLRPRQVEVWFQNRRARTKLKQTEVDCEHLKRWCDQLADDNRRLHKELAELR-ALK 184 69*************************************************************************************9.555 PP

Sequence ? help Back to Top
Protein Sequence Length: 257 aa Download sequence
MERQGLDLGL SLGLGLTTAA TWPAAGFCLN SGMAEQEVIR RDDVVAAAAA EDERFACSPG 60 SPVSSGSGKR GSGSGSGSGD EVDDAGCDVG GGARKKLRLS KDQAAVLEEC FKTHHTLTPK 120 QKVALAKSLN LRPRQVEVWF QNRRARTKLK QTEVDCEHLK RWCDQLADDN RRLHKELAEL 180 RALKATPTPP AAAPPLTTLT MCLSCKRVAN AGVPSPAAAM FPGHPQFLCG FRDHAGAASS 240 SYGGASSGLA KAVRAAR

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	143	151	RRARTKLKQ

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G06710.1	2e-45	HD-ZIP family protein

Link Out ? help Back to Top
Ensembl	ONIVA06G03230.1