PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

ONIVA06G03970.1

Organism

Oryza sativa f. spontanea

Taxonomic ID

4536

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa

Family

AP2

Protein Properties

Length: 397aa MW: 42890.9 Da PI: 7.622

Description

AP2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
ONIVA06G03970.1	genome	EnsemblPlants	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	AP2	46.2	1.1e-14	80	139	1	55
AP2 1 sgykGVrwdkkrgrWvAeIrd.pseng...kr.krfslgkfgtaeeAakaaiaarkkleg 55 s+++GV++++++gr++A+++d ++n k+ k+++lg + ++ Aa+a++ a++k++g ONIVA06G03970.1 80 SRFRGVSRHRWTGRFEAHLWDkGTWNPtqkKKgKQVYLGAYNEEDAAARAYDLAALKYWG 139 789****************888855566447******99***********98 PP
2	AP2	52.3	1.4e-16	182	233	1	55
AP2 1 sgykGVrwdkkrgrWvAeIrd.psengkrkrfslgkfgtaeeAakaaiaarkkleg 55 s+y+GV +++ +grW+A+I + g +k+ +lg++ t eeAa+a++ a+ +++g ONIVA06G03970.1 182 SKYRGVARHHHNGRWEARIGRvF---G-NKYLYLGTYSTQEEAARAYDIAAIEYRG 233 89**99******99966...3.6***********************97 PP

Sequence ? help Back to Top
Protein Sequence Length: 397 aa Download sequence
METYGLVKDE LLHGIGGGQG RLYCEVKPTA APAVITAAGG GAKSVKRRKR EPSAAAMSAV 60 TVAGNGKEAG GSNAANKRSS RFRGVSRHRW TGRFEAHLWD KGTWNPTQKK KGKQVYLGAY 120 NEEDAAARAY DLAALKYWGP TTYTNFPVAD YEKELKLMQG VSKEEYLASI RRKSNGFSRG 180 VSKYRGVARH HHNGRWEARI GRVFGNKYLY LGTYSTQEEA ARAYDIAAIE YRGINAVTNF 240 DLSTYIRWLK PPSSSSAAGT PHHHGGGMVV GADRVLAPAQ SYPISAAADD DVAGCWRPLP 300 SPSSSTTTAL SLLLRSSMFQ ELVARQPVVE GDDGQLAVVS GDDADADADV KEPPPESEYG 360 EVFASDEAAA AAAYGCSMYE LDDSFALIDD SVWNCLI

Sequence ? help Back to Top

Protein Sequence Length: 397 aa Download sequence

METYGLVKDE LLHGIGGGQG RLYCEVKPTA APAVITAAGG GAKSVKRRKR EPSAAAMSAV  60
TVAGNGKEAG GSNAANKRSS RFRGVSRHRW TGRFEAHLWD KGTWNPTQKK KGKQVYLGAY  120
NEEDAAARAY DLAALKYWGP TTYTNFPVAD YEKELKLMQG VSKEEYLASI RRKSNGFSRG  180
VSKYRGVARH HHNGRWEARI GRVFGNKYLY LGTYSTQEEA ARAYDIAAIE YRGINAVTNF  240
DLSTYIRWLK PPSSSSAAGT PHHHGGGMVV GADRVLAPAQ SYPISAAADD DVAGCWRPLP  300
SPSSSTTTAL SLLLRSSMFQ ELVARQPVVE GDDGQLAVVS GDDADADADV KEPPPESEYG  360
EVFASDEAAA AAAYGCSMYE LDDSFALIDD SVWNCLI

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	43	49	KSVKRRK
2	106	114	PTQKKKGKQ

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G54320.3	9e-85	AP2 family protein

Link Out ? help Back to Top
Ensembl	ONIVA06G03970.1