PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID ONIVA06G03980.1
Organism
Oryza sativa f. spontanea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
Family Whirly
Protein Properties Length: 505aa    MW: 55940.7 Da    PI: 10.5035
Description Whirly family protein
Gene Model
Gene Model ID Type Source Coding Sequence
ONIVA06G03980.1genomeEnsemblPlantsView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Whirly191.11.8e-59972341138
           Whirly   1 svyktkaalkvkavrptfealdsgnlklkraGglllelanataerkydWekkqsfalsatevaelvdlaskesceffhdpaakgsneGkvrkal 94 
                      s+yk+kaa++++++ p+f+ ldsg+ k+ ++G++ll++a+a+a+r+ydW +kq+f+ls+ e+++l+ l++ +sceffhdp+++ s+eGkvrk+l
  ONIVA06G03980.1  97 SIYKGKAAMSLDPRPPQFVPLDSGAYKVVKEGFVLLQFAPAVATRQYDWTRKQVFSLSVWEMGSLLTLGPTDSCEFFHDPFKGRSDEGKVRKVL 190
                      79******************************************************************************************** PP

           Whirly  95 kvePlpdGsGlfvnlsvtnslvkgnesfsvPvskaefavlrsll 138
                      kveP pdG   f+nlsv+n l++ +e++++P++k+efav+ s +
  ONIVA06G03980.1 191 KVEPTPDGNSRFFNLSVQNRLLNIDENIYIPITKGEFAVIVSTF 234
                      ****************************************9987 PP
Sequence ? help Back to Top
Protein Sequence    Length: 505 aa     Download sequence    
MPPPSPPLFL SLPSPPPPPL PHLLPSHRPA AALTLAPALS SRRVSSVCPV ASQRHSDYFD  60
PRAPPPPPPR DGYGGPAYSP PAAQGGQQNG RVFSTYSIYK GKAAMSLDPR PPQFVPLDSG  120
AYKVVKEGFV LLQFAPAVAT RQYDWTRKQV FSLSVWEMGS LLTLGPTDSC EFFHDPFKGR  180
SDEGKVRKVL KVEPTPDGNS RFFNLSVQNR LLNIDENIYI PITKGEFAVI VSTFNYIIPH  240
LMGWSTFTNS IKPEDSRAYT RPQSGPEYEW RSLSQCSTWT GAMGATEDFV RRVVWNRDQT  300
WSLVPKQSNA QPCSVESTRR QKNARSERCG RRCLAARDLA HAALVEIPDS PMEKSLPTPA  360
IHPPTTESFL PRRHQPRRHE DQIHGGLGID WNGAGAATNK ITKENQVTQN HTRKIKNTER  420
RGEAAASTTP PVLEPPPRTL RRSAPSSRPP PWSGRRRALP PRTPRSAAAV CKRGNILGIN  480
LNLPVDLSLI LNYCGKRVPT GFKCF