PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

ONIVA06G04550.1

Organism

Oryza sativa f. spontanea

Taxonomic ID

4536

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa

Family

TCP

Protein Properties

Length: 214aa MW: 23243.5 Da PI: 11.778

Description

TCP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
ONIVA06G04550.1	genome	EnsemblPlants	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	TCP	39.6	1.9e-12	33	119	16	98
TCP 16 ggRdRR...vRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgtssssasec.eaesssssasnsssgkaaksaaksk 98 g R RR Rls+++ + f+d+qd+LG+ ++sk ieWL+ +a a l + +a + ++s + s+++ + +ka +a ++k ONIVA06G04550.1 33 GVRARRtstARLSVPTSIAFYDIQDRLGVNRPSKSIEWLICAALVARLLLRPPQRRPAPHPrRPSSGRPSEEQARTRKATVAASPRK 119 6677773335*********************************99999998886666633333333333333222221111111111 PP

Sequence ? help Back to Top
Protein Sequence Length: 214 aa Download sequence
MEEVVVGKEC KRPRCALVGV GGHGSDVADE PGGVRARRTS TARLSVPTSI AFYDIQDRLG 60 VNRPSKSIEW LICAALVARL LLRPPQRRPA PHPRRPSSGR PSEEQARTRK ATVAASPRKS 120 GEKRRKTRSG CAAWKAERIT KLRVWREGWM PRREASTSAA SAGQSWIRKL STPGSGDSCS 180 CSDAKPAKRR WAEKAGEVVA REAGGAERGG GGRR

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G53230.1	7e-11	TCP family protein

Link Out ? help Back to Top
Ensembl	ONIVA06G04550.1