PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

ONIVA06G05390.1

Organism

Oryza sativa f. spontanea

Taxonomic ID

4536

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa

Family

MYB

Protein Properties

Length: 447aa MW: 50396.6 Da PI: 7.1263

Description

MYB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
ONIVA06G05390.1	genome	EnsemblPlants	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	55.4	1.4e-17	146	192	1	48
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +g WT eEd +lv++v+q+G + W+ Ia+ ++ gR +kqc++rw+++l ONIVA06G05390.1 146 KGQWTLEEDRKLVKLVEQFGLRKWSHIAQILP-GRVGKQCRERWHNHL 192 799***************************.***********97 PP
2	Myb_DNA-binding	51.6	2.1e-16	198	240	1	45
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwq 45 ++ W++eEd l++ +k+ G++ W+ Ia++++ gRt++++k++w+ ONIVA06G05390.1 198 KDTWSEEEDIVLIQTHKEVGNK-WAEIAKHLP-GRTENSIKNHWN 240 679*****************.*****.*********8 PP

Sequence ? help Back to Top
Protein Sequence Length: 447 aa Download sequence
MRRAAGWGIF CDVEFARRDA GGFGRAKQNG HQELHLVDHP FNNVTDGHEY YSPSAGGSFL 60 PFATYYDLGH EYYPQGGEKD AVVVDRASPT IRKASPHLPL FTPKSEVSHL IGGGVVGSYK 120 AFEMNSRLIR RKRASGKSLK KANVVKGQWT LEEDRKLVKL VEQFGLRKWS HIAQILPGRV 180 GKQCRERWHN HLRPNIKKDT WSEEEDIVLI QTHKEVGNKW AEIAKHLPGR TENSIKNHWN 240 ATKRRQFARR RSRASSKNPK SGTLLQNYIK SLGIGPIKSS VRQAPPESTA VSSSSPASTQ 300 KLAEVNGKIR PDSNPSNQMV TQGILTMDEN SYIQTNSCEE LLVSTYDDLC LDMCDHLFET 360 KDETPYQVYN IDDDVDMNYI FNHIDYANKI GHEIDMEMAW DDDVLQDDES AGSSPLETPA 420 GLAQINTVHV KEEMDLIEMV TRTQSCG

Sequence ? help Back to Top

Protein Sequence Length: 447 aa Download sequence

MRRAAGWGIF CDVEFARRDA GGFGRAKQNG HQELHLVDHP FNNVTDGHEY YSPSAGGSFL  60
PFATYYDLGH EYYPQGGEKD AVVVDRASPT IRKASPHLPL FTPKSEVSHL IGGGVVGSYK  120
AFEMNSRLIR RKRASGKSLK KANVVKGQWT LEEDRKLVKL VEQFGLRKWS HIAQILPGRV  180
GKQCRERWHN HLRPNIKKDT WSEEEDIVLI QTHKEVGNKW AEIAKHLPGR TENSIKNHWN  240
ATKRRQFARR RSRASSKNPK SGTLLQNYIK SLGIGPIKSS VRQAPPESTA VSSSSPASTQ  300
KLAEVNGKIR PDSNPSNQMV TQGILTMDEN SYIQTNSCEE LLVSTYDDLC LDMCDHLFET  360
KDETPYQVYN IDDDVDMNYI FNHIDYANKI GHEIDMEMAW DDDVLQDDES AGSSPLETPA  420
GLAQINTVHV KEEMDLIEMV TRTQSCG

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G18770.1	3e-64	MYB family protein

Link Out ? help Back to Top
Ensembl	ONIVA06G05390.1